PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pp3c7_1850V3.2.p
Common NamePHYPADRAFT_231364
Organism
Physcomitrella patens
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Bryophytina; Bryopsida; Funariidae; Funariales; Funariaceae; Physcomitrella
Family bHLH
Protein Properties Length: 572aa    MW: 62752.8 Da    PI: 6.0426
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pp3c7_1850V3.2.pgenomeCOSMOSSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH29.81.1e-09375419655
                       HHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
               HLH   6 nerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                       +++E++RR++ + ++e L++++P+      +K +K+++   A+eYI++L+
  Pp3c7_1850V3.2.p 375 KKAEQQRRNKFKRSLESLKKIVPTI-----TKKDKVAVIYSAIEYIRQLE 419
                       689*********************7.....6*****************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088812.728369418IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474597.33E-12374435IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000103.2E-7375419IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.108.6E-13375432IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003537.8E-8375424IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000835.55E-8377423No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Plant Ontology ? help Back to Top
PO Term PO Category PO Description
PO:0025017anatomyplant spore
PO:0030018anatomygametophore
Sequence ? help Back to Top
Protein Sequence    Length: 572 aa     Download sequence    Send to blast
MMQYYIDESN IPHTYDLAPP STATGLLQEF VKTGMEVVDQ DSYFSAMTGN LAGLLGNFPA  60
AAAPAMSAEE NRQNFALLSG ITTSASIGED AASDTVGYGK IVRSEEPYHP WTLTGSMNSS  120
AQPPCAHTGF QDMPEKLNIF IELEQYLEQF RHVEEAGPGQ GLEELEKRII HEWSSKQLPL  180
PITTQFPWEI IQEGLQRGDE LLEAETIDLT KQSAPMSLLS VQIDDGLDKI AFGCNQNIVA  240
NIPGGDLHAS PLVASSLPNL NNQTISPSLS CMHGTPASTE QVPGRRSSRS AFQVYAPAQS  300
TRLSQHSMSS NRKPMIHYWV EKFGPKLKSL QVLQPSSSDQ SAVGLGNCNV RVGTSYDFST  360
SISAAHDFRQ ALVRKKAEQQ RRNKFKRSLE SLKKIVPTIT KKDKVAVIYS AIEYIRQLES  420
RISSLKKELE EAAPGFLDME NSATLFARGG VNVSGEQDLG LHYIENPAGP SSSPATTHVV  480
VEGTEGGETL NLRVEANYHA RSLPKLLNVL QDLDVVVVAM DYGCKNERFR ATVRVKTSRN  540
VRRSNHELEQ TLCRALEVGG LMPPSRSQQL F*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1379386QRRNKFKR
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024380196.10.0uncharacterized protein LOC112284544
TrEMBLA9SWT90.0A9SWT9_PHYPA; Predicted protein
STRINGPP1S130_10V6.10.0(Physcomitrella patens)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G26744.42e-09bHLH family protein
Publications ? help Back to Top
  1. Rensing SA, et al.
    The Physcomitrella genome reveals evolutionary insights into the conquest of land by plants.
    Science, 2008. 319(5859): p. 64-9
    [PMID:18079367]