PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pp3c7_17700V3.6.p
Organism
Physcomitrella patens
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Bryophytina; Bryopsida; Funariidae; Funariales; Funariaceae; Physcomitrella
Family AP2
Protein Properties Length: 1968aa    MW: 213135 Da    PI: 8.5141
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pp3c7_17700V3.6.pgenomeCOSMOSSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP2414.8e-13649698155
                AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 
                        s++ GVr ++ +g + AeIr p       kr +lg+f t+e Aa+a++ a++ ++g
  Pp3c7_17700V3.6.p 649 SRFVGVRKRP-WGAYGAEIRTP-----EgKRLWLGTFTTEEAAARAYDDAARIFRG 698
                        6899******.**********8.....55**********************98887 PP
2AP2323.1e-1013011348455
                AP2    4 kGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55  
                          GV   + +gr+ A I++p++   +k++++g f+t+eeAa a+++ + +++g
  Pp3c7_17700V3.6.p 1301 MGVQATP-SGRFKAKIYVPKT---KKHIYIGIFDTPEEAAHAYDEVAYRKRG 1348
                         6887778.7*********954...5************************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF138912.1E-13236298IPR025927Potential DNA-binding domain
CDDcd000184.28E-14649705No hitNo description
PfamPF008475.1E-7649693IPR001471AP2/ERF domain
SuperFamilySSF541711.18E-15649706IPR016177DNA-binding domain
PROSITE profilePS5103220.85650706IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.3E-23650706IPR001471AP2/ERF domain
SMARTSM003807.8E-28650712IPR001471AP2/ERF domain
PRINTSPR003671.1E-5651662IPR001471AP2/ERF domain
PRINTSPR003671.1E-5672688IPR001471AP2/ERF domain
PROSITE profilePS5103214.94812991356IPR001471AP2/ERF domain
CDDcd000184.85E-1712991358No hitNo description
Gene3DG3DSA:3.30.730.101.7E-1612991357IPR001471AP2/ERF domain
SMARTSM003801.9E-1412991362IPR001471AP2/ERF domain
PfamPF008478.3E-513001348IPR001471AP2/ERF domain
SuperFamilySSF541714.77E-1313001357IPR016177DNA-binding domain
PROSITE profilePS5103211.81215131579IPR001471AP2/ERF domain
CDDcd000185.73E-1115221580No hitNo description
SMARTSM003808.4E-815231585IPR001471AP2/ERF domain
SuperFamilySSF541714.58E-915241580IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.102.4E-1015241580IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 1968 aa     Download sequence    Send to blast
MDNIVKPTGS EVSEAEAAPA VHCSDVELKP VHSMFELGES DLKVEHENET LVASPSVSSN  60
SVASNLLSSR ARTAVWRKKI DPGIGAPVEV GQKILEFSTP AVATQIATAV APRQRVFHED  120
SRPGSSSTLP VTLPVAYRPL PPASGLMALI PNLLTLAPDI QLPSPGLSPL PANLFLYSPG  180
LPLTSTGHRR IPAAPSNSTL VPGCSVPQSL TNISRVPSRS PQASGTDLKA RSGHMCHSSR  240
QSCSQYCLQG YKFCLWHILE DPSAPYKQCD FVEYPSRERC RFPVSLKSEN TRFCQMHKQV  300
DGFGINPVTL KNQQSMEHPP LGEFSVLVLA AAVAHQMEIV APPKLWTSLF VNQLPAVVPP  360
SDTVSAKEEH GTPLFQRSTS GKKAASLVQS DPKPAETVPH TNSKQVSRRT HGGLNLKDDG  420
RGTGSTTGFS TKVCVECNLD NVSCRATGCG YQDFTLVGNA QLKIGSNSTK VANELENFRA  480
QLGDRLSSHG ISLPYTMPSG EGKAGIDHGF CGGCRGLRRS GSPHHDKVVG PITAGQVFAN  540
GAPTNRRAHG ASSVSCLVDI GPIELNKIGL MCSSQHLTGL LNGKRSYEQL SILPAIDFGG  600
LDMATMGVRC GPREPRAILG LAIKRKSKVQ TPRDSSSMGR GQGRRVFFSR FVGVRKRPWG  660
AYGAEIRTPE GKRLWLGTFT TEEAAARAYD DAARIFRGKS AVTNFVQGSE FDFGMNSPFA  720
VGSSSTSNEE DTVSDCPGVK KRSALNTKKE KDSELVQLGI VQSNPTNRDR IGTRNQSDSF  780
GSPIETINLL GGLETNFKES VKSLGATSEG ANRSRIGNLK VPGGLLKDRS GRKISQKGTG  840
QVASSKKDGK FDLPSWSEKR LDEDTSGPDR LLLLSNFAIS QEGMEMEEGL DFSKNQSKEH  900
RACTASTVAT GDSRDSDEES DGASDVEPGL DVDSGLQVKM GEAMGEKGNR NSKASGECSK  960
KKPKAQDIAQ SFKKIRLASH NKSDTDINKV LKRKVSDSEK ESGSSIVKSL KCKLTKPSLE  1020
SANCKPYNGS KSMETDCKDA VKAPNKKSCI AKAPRSSMSS GHEKLGNEVT ETASHKVKRK  1080
SEEFRKTEVE SEKERLKPKK QKVEEVEEIS ASAKRRRIPS EKVKANIGAS DAAAPAAKEA  1140
AKNNDTVKQE FCVVGQGSRS TQRALRKSNM YRTFADSFVE SDYARVYKTT SKRRAMLDKE  1200
GRKLDSLSTN PSSEKSPASS PKETTIPSKS RRVKKPQEEE DEGKDKAFEE RSGQVSKKPS  1260
PSKSKRAPVA DEEEQPVSRS QSADKSSAKS SGKRRSQRNF MGVQATPSGR FKAKIYVPKT  1320
KKHIYIGIFD TPEEAAHAYD EVAYRKRGAT APLNFPEAFH AKIKAKQPIK KVLIQLTDAG  1380
DFEAMCYDPK AKDYHSVGVF SSVDGARRAG AREAATLDCS NSEASDKDNE DGDGDGESWS  1440
GKNDSVSDSK PMKEKRCKPS YSENAGLPVT RDVEGESDED DVVVVEQSQK ESVRSMRSKK  1500
GTFARAATNK KPSRRGNMTR RADFRGVYCN GHKFQSIYYN PATKKHTYLG TFLTAEEAAR  1560
AHDQVAFAQF GLEAKLNLPE EIETLRRTVK VVGRNAVLIN NSKSKEPEED GEEEKEDGAD  1620
SRSSSPVADL NDMENTEVPI DITRADVLED EDDELSSPLS QAPSIPSGAK PSKLVSTKSN  1680
SFKGNFLDIV LKENNDEDLC NATIADRTGD AKSSEKPSAG MKPNAGVCGP AAEDSNVLGQ  1740
QGNREKEGGD DLRLGADAEE KTGRRVSRRK MYRASRIGIP GSALGEIVRF PSEKDKANEL  1800
QEEKDGWLGE HHLPEGQRWA SVEEKKKVQD GSSQQLQLRA SGDTSLKTSD VEGSAESVPQ  1860
KNKNEEREAG PVMPLFDVLA GEFLKASIVL ETAEADEGKC QFEKEGEKSM PRGSEAYATC  1920
DKVMKDGFLK NEPVKVPKDE TDITESLVED QSSVTSSDNV GVASVDG*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A5e-14639705571Ethylene-responsive transcription factor ERF096
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
111131117KRRRI
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Ppa.182793e-36protonema
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024381659.10.0uncharacterized protein LOC112285222 isoform X1
RefseqXP_024381660.10.0uncharacterized protein LOC112285222 isoform X1
RefseqXP_024381661.10.0uncharacterized protein LOC112285222 isoform X1
RefseqXP_024381662.10.0uncharacterized protein LOC112285222 isoform X1
RefseqXP_024381663.10.0uncharacterized protein LOC112285222 isoform X1
RefseqXP_024381664.10.0uncharacterized protein LOC112285222 isoform X1
RefseqXP_024381665.10.0uncharacterized protein LOC112285222 isoform X1
RefseqXP_024381666.10.0uncharacterized protein LOC112285222 isoform X1
RefseqXP_024381667.10.0uncharacterized protein LOC112285222 isoform X1
TrEMBLA0A2K1KC180.0A0A2K1KC18_PHYPA; Uncharacterized protein
STRINGPP1S2_692V6.10.0(Physcomitrella patens)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G33710.14e-12ERF family protein