PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Pp3c7_17700V3.2.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Bryophytina; Bryopsida; Funariidae; Funariales; Funariaceae; Physcomitrella
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Family | AP2 | ||||||||
Protein Properties | Length: 2061aa MW: 223605 Da PI: 8.4271 | ||||||||
Description | AP2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 40.9 | 5e-13 | 649 | 698 | 1 | 55 |
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 s++ GVr ++ +g + AeIr p kr +lg+f t+e Aa+a++ a++ ++g Pp3c7_17700V3.2.p 649 SRFVGVRKRP-WGAYGAEIRTP-----EgKRLWLGTFTTEEAAARAYDDAARIFRG 698 6899******.**********8.....55**********************98887 PP | |||||||
2 | AP2 | 25.1 | 4.4e-08 | 980 | 1025 | 4 | 53 |
AP2 4 kGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkl 53 +GVr +gr++A I+d ++ rk++++g++ + eAa+a++ ++l Pp3c7_17700V3.2.p 980 TGVRKSQ-SGRFEATIYDRTT---RKKVYVGTYSSILEAARARDLKVLEL 1025 69*9655.8*********533...5*******************988776 PP | |||||||
3 | AP2 | 31.9 | 3.2e-10 | 1394 | 1441 | 4 | 55 |
AP2 4 kGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 GV + +gr+ A I++p++ +k++++g f+t+eeAa a+++ + +++g Pp3c7_17700V3.2.p 1394 MGVQATP-SGRFKAKIYVPKT---KKHIYIGIFDTPEEAAHAYDEVAYRKRG 1441 6887778.7*********954...5************************998 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF13891 | 2.2E-13 | 236 | 298 | IPR025927 | Potential DNA-binding domain |
CDD | cd00018 | 4.43E-14 | 649 | 705 | No hit | No description |
SuperFamily | SSF54171 | 1.24E-15 | 649 | 706 | IPR016177 | DNA-binding domain |
Pfam | PF00847 | 5.3E-7 | 649 | 693 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 7.8E-28 | 650 | 712 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 20.85 | 650 | 706 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 1.3E-23 | 650 | 706 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 1.2E-5 | 651 | 662 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 1.2E-5 | 672 | 688 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 1.3E-4 | 976 | 1040 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 11.43 | 978 | 1034 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 1.4E-9 | 980 | 1035 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 3.33E-8 | 980 | 1035 | IPR016177 | DNA-binding domain |
CDD | cd00018 | 3.52E-11 | 981 | 1035 | No hit | No description |
SMART | SM00380 | 1.9E-14 | 1392 | 1455 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 1.8E-16 | 1392 | 1450 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 5.13E-17 | 1392 | 1451 | No hit | No description |
PROSITE profile | PS51032 | 14.948 | 1392 | 1449 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 5.04E-13 | 1393 | 1450 | IPR016177 | DNA-binding domain |
Pfam | PF00847 | 8.8E-5 | 1393 | 1441 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 11.812 | 1606 | 1672 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 6.04E-11 | 1615 | 1673 | No hit | No description |
SMART | SM00380 | 8.4E-8 | 1616 | 1678 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 2.5E-10 | 1617 | 1673 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 4.84E-9 | 1617 | 1673 | IPR016177 | DNA-binding domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 2061 aa Download sequence Send to blast |
MDNIVKPTGS EVSEAEAAPA VHCSDVELKP VHSMFELGES DLKVEHENET LVASPSVSSN 60 SVASNLLSSR ARTAVWRKKI DPGIGAPVEV GQKILEFSTP AVATQIATAV APRQRVFHED 120 SRPGSSSTLP VTLPVAYRPL PPASGLMALI PNLLTLAPDI QLPSPGLSPL PANLFLYSPG 180 LPLTSTGHRR IPAAPSNSTL VPGCSVPQSL TNISRVPSRS PQASGTDLKA RSGHMCHSSR 240 QSCSQYCLQG YKFCLWHILE DPSAPYKQCD FVEYPSRERC RFPVSLKSEN TRFCQMHKQV 300 DGFGINPVTL KNQQSMEHPP LGEFSVLVLA AAVAHQMEIV APPKLWTSLF VNQLPAVVPP 360 SDTVSAKEEH GTPLFQRSTS GKKAASLVQS DPKPAETVPH TNSKQVSRRT HGGLNLKDDG 420 RGTGSTTGFS TKVCVECNLD NVSCRATGCG YQDFTLVGNA QLKIGSNSTK VANELENFRA 480 QLGDRLSSHG ISLPYTMPSG EGKAGIDHGF CGGCRGLRRS GSPHHDKVVG PITAGQVFAN 540 GAPTNRRAHG ASSVSCLVDI GPIELNKIGL MCSSQHLTGL LNGKRSYEQL SILPAIDFGG 600 LDMATMGVRC GPREPRAILG LAIKRKSKVQ TPRDSSSMGR GQGRRVFFSR FVGVRKRPWG 660 AYGAEIRTPE GKRLWLGTFT TEEAAARAYD DAARIFRGKS AVTNFVQGSE FDFGMNSPFA 720 VGSSSTSNEE DTVSDCPGVK KRSALNTKKE KDSELVQLGI VQSNPTNRDR IGTRNQSDSF 780 GSPIETINLL GGLETNFKES VKSLGATSEG ANRSRIGNLK VPGGLLKDRS GRKISQKGTG 840 QVASSKKDGK FDLPSWSEKR LDEDTSGPDR LLLLSNFAIS QEGMEMEEGL DFSKNQSKEH 900 RACTASTVAT GDSRDSDEES DGASDVEPGL DVDSGLQVKM GEAMGEKGKY AELSISAELS 960 EEEKQQLLDL GEGDPEFRLT GVRKSQSGRF EATIYDRTTR KKVYVGTYSS ILEAARARDL 1020 KVLELGSIST LNFPDMRAIQ ESRNSKASGE CSKKKPKAQD IAQSFKKIRL ASHNKSDTDI 1080 NKVLKRKVSD SEKESGSSIV KSLKCKLTKP SLESANCKPY NGSKSMETDC KDAVKAPNKK 1140 SCIAKAPRSS MSSGHEKLGN EVTETASHKV KRKSEEFRKT EVESEKERLK PKKQKVEEVE 1200 EISASAKRRR IPSEKVKANI GASDAAAPAA KEAAKNNDTV KQEFCVVGQG SRSTQRALRK 1260 SNMYRTFADS FVESDYARVY KTTSKRRAML DKEGRKLDSL STNPSSEKSP ASSPKETTIP 1320 SKSRRVKKPQ EEEDEGKDKA FEERSGQVSK KPSPSKSKRA PVADEEEQPV SRSQSADKSS 1380 AKSSGKRRSQ RNFMGVQATP SGRFKAKIYV PKTKKHIYIG IFDTPEEAAH AYDEVAYRKR 1440 GATAPLNFPE AFHAKIKAKQ PIKKVLIQLT DAGDFEAMCY DPKAKDYHSV GVFSSVDGAR 1500 RAGAREAATL DCSNSEASDK DNEDGDGDGE SWSGKNDSVS DSKPMKEKRC KPSYSENAGL 1560 PVTRDVEGES DEDDVVVVEQ SQKESVRSMR SKKGTFARAA TNKKPSRRGN MTRRADFRGV 1620 YCNGHKFQSI YYNPATKKHT YLGTFLTAEE AARAHDQVAF AQFGLEAKLN LPEEIETLRR 1680 TVKVVGRNAV LINNSKSKEP EEDGEEEKED GADSRSSSPV ADLNDMENTE VPIDITRADV 1740 LEDEDDELSS PLSQAPSIPS GAKPSKLVST KSNSFKGNFL DIVLKENNDE DLCNATIADR 1800 TGDAKSSEKP SAGMKPNAGV CGPAAEDSNV LGQQGNREKE GGDDLRLGAD AEEKTGRRVS 1860 RRKMYRASRI GIPGSALGEI VRFPSEKDKA NELQEEKDGW LGEHHLPEGQ RWASVEEKKK 1920 VQDGSSQQLQ LRASGDTSLK TSDVEGSAES VPQKNKNEER EAGPVMPLFD VLAGEFLKAS 1980 IVLETAEADE GKCQFEKEGE KSMPRGSEAY ATCDKVMKDG FLKNEPVKVP KDETDITESL 2040 VEDQSSVTSS DNVGVASVDG * |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5wx9_A | 5e-14 | 639 | 705 | 5 | 71 | Ethylene-responsive transcription factor ERF096 |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 1206 | 1210 | KRRRI |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Ppa.18279 | 3e-36 | protonema |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_024381659.1 | 0.0 | uncharacterized protein LOC112285222 isoform X1 | ||||
Refseq | XP_024381660.1 | 0.0 | uncharacterized protein LOC112285222 isoform X1 | ||||
Refseq | XP_024381661.1 | 0.0 | uncharacterized protein LOC112285222 isoform X1 | ||||
Refseq | XP_024381662.1 | 0.0 | uncharacterized protein LOC112285222 isoform X1 | ||||
Refseq | XP_024381663.1 | 0.0 | uncharacterized protein LOC112285222 isoform X1 | ||||
Refseq | XP_024381664.1 | 0.0 | uncharacterized protein LOC112285222 isoform X1 | ||||
Refseq | XP_024381665.1 | 0.0 | uncharacterized protein LOC112285222 isoform X1 | ||||
Refseq | XP_024381666.1 | 0.0 | uncharacterized protein LOC112285222 isoform X1 | ||||
Refseq | XP_024381667.1 | 0.0 | uncharacterized protein LOC112285222 isoform X1 | ||||
TrEMBL | A0A2K1KC18 | 0.0 | A0A2K1KC18_PHYPA; Uncharacterized protein | ||||
STRING | PP1S2_692V6.1 | 0.0 | (Physcomitrella patens) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G33710.1 | 4e-12 | ERF family protein |
Link Out ? help Back to Top | |
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Phytozome | Pp3c7_17700V3.2.p |