PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Pp3c7_12740V3.2.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Bryophytina; Bryopsida; Funariidae; Funariales; Funariaceae; Physcomitrella
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Family | LSD | ||||||||
Protein Properties | Length: 178aa MW: 18585.7 Da PI: 7.9654 | ||||||||
Description | LSD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-LSD1 | 39.6 | 8.3e-13 | 19 | 43 | 1 | 25 |
zf-LSD1 1 CggCrtlLsYPrGApsVRCalCdtV 25 C+gCrtlL YP GA++VRCalC V Pp3c7_12740V3.2.p 19 CSGCRTLLVYPQGASNVRCALCSSV 43 **********************876 PP | |||||||
2 | zf-LSD1 | 46.3 | 6.8e-15 | 58 | 82 | 1 | 25 |
zf-LSD1 1 CggCrtlLsYPrGApsVRCalCdtV 25 CggCrtlL+Y rGA+sV+C++C+tV Pp3c7_12740V3.2.p 58 CGGCRTLLMYMRGATSVQCSCCHTV 82 ************************9 PP | |||||||
3 | zf-LSD1 | 42.2 | 1.4e-13 | 96 | 120 | 1 | 25 |
zf-LSD1 1 CggCrtlLsYPrGApsVRCalCdtV 25 CggC+ +L+Y +GA sV+CalC++V Pp3c7_12740V3.2.p 96 CGGCGMTLMYAYGAQSVKCALCQFV 120 ***********************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
TIGRFAMs | TIGR01053 | 7.9E-15 | 16 | 46 | IPR005735 | Zinc finger, LSD1-type |
Pfam | PF06943 | 6.0E-12 | 19 | 43 | IPR005735 | Zinc finger, LSD1-type |
TIGRFAMs | TIGR01053 | 2.7E-16 | 55 | 84 | IPR005735 | Zinc finger, LSD1-type |
Pfam | PF06943 | 1.2E-12 | 58 | 82 | IPR005735 | Zinc finger, LSD1-type |
TIGRFAMs | TIGR01053 | 5.8E-11 | 93 | 123 | IPR005735 | Zinc finger, LSD1-type |
Pfam | PF06943 | 4.7E-12 | 96 | 120 | IPR005735 | Zinc finger, LSD1-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0000303 | Biological Process | response to superoxide | ||||
GO:0001666 | Biological Process | response to hypoxia | ||||
GO:0002240 | Biological Process | response to molecule of oomycetes origin | ||||
GO:0009626 | Biological Process | plant-type hypersensitive response | ||||
GO:0009862 | Biological Process | systemic acquired resistance, salicylic acid mediated signaling pathway | ||||
GO:0010104 | Biological Process | regulation of ethylene-activated signaling pathway | ||||
GO:0010310 | Biological Process | regulation of hydrogen peroxide metabolic process | ||||
GO:0010602 | Biological Process | regulation of 1-aminocyclopropane-1-carboxylate metabolic process | ||||
GO:0010618 | Biological Process | aerenchyma formation | ||||
GO:0043069 | Biological Process | negative regulation of programmed cell death |
Sequence ? help Back to Top |
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Protein Sequence Length: 178 aa Download sequence Send to blast |
MMPYPPMQGG QPQHGQLICS GCRTLLVYPQ GASNVRCALC SSVTQVPPHG TEMAQLVCGG 60 CRTLLMYMRG ATSVQCSCCH TVNLAMEAPQ VAHINCGGCG MTLMYAYGAQ SVKCALCQFV 120 TSITMLNVRV PLPSQQPRPP QAAGGPAPAP TSSHTQTVVV ENPMTMDESG KLVQSVG* |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Ppa.6526 | 0.0 | gametophore| protonema| sporophyte |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Positive regulator of reactive oxygen-induced cell death. May be involved in the repression of the copper/zinc superoxide dismutase CSD1 and CSD2 that detoxify accumulating superoxide before the reactive oxygen species (ROS) can trigger a cell death cascade. LSD1 and LOL1 have antagonistic effects on CSD1 and CSD2 accumulation to regulate oxidative stress-induced cell death. {ECO:0000269|PubMed:12732715}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_024381198.1 | 1e-125 | protein LOL1-like | ||||
Swissprot | Q93ZB1 | 5e-57 | LOL1_ARATH; Protein LOL1 | ||||
TrEMBL | A0A2K1KBH6 | 1e-121 | A0A2K1KBH6_PHYPA; Uncharacterized protein | ||||
STRING | PP1S75_166V6.1 | 1e-124 | (Physcomitrella patens) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G32540.1 | 2e-56 | lsd one like 1 |
Link Out ? help Back to Top | |
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Phytozome | Pp3c7_12740V3.2.p |
Publications ? help Back to Top | |||
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