PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pp3c7_12520V3.2.p

Common Name

PHYPADRAFT_233271

Organism

Physcomitrella patens

Taxonomic ID

3218

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Bryophytina; Bryopsida; Funariidae; Funariales; Funariaceae; Physcomitrella

Family

C2H2

Protein Properties

Length: 758aa MW: 84808.1 Da PI: 8.9715

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pp3c7_12520V3.2.p	genome	COSMOSS	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	10.8	0.0016	717	739	1	23
EEETTTTEEESSHHHHHHHHHH.T CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirt.H 23 ++C Cg++F +++Lk+H+r H Pp3c7_12520V3.2.p 717 HECFQCGRTF-KPESLKVHLRGcH 739 78******.********955 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF06136	6.9E-29	11	159	IPR010369	Protein of unknown function DUF966

Plant Ontology ? help Back to Top
PO Term	PO Category	PO Description
PO:0025017	anatomy	plant spore
PO:0030018	anatomy	gametophore

Sequence ? help Back to Top
Protein Sequence Length: 758 aa Download sequence Send to blast
METHPEFYHK VEVLYILIQG NEQIGHPHMI QVQYPSHQQA PTLRDVKCRL TALRGRGMPD 60 LYSWSYKRSY KGNFIWCDVF DNDVILPLSG SGEYVLKALE VFEVSLDALD QEVAVHQVAA 120 QSAMRTLPRN RCRGTDQSPM QEQHLTEMHI IGNVCNTISS ILESKHDLLS DSGLNNIATK 180 VFSNYHIDIY NCGRPAFVSG DLIENNNAFE KIKVSDSSTC KCVSNGNEGI LAEPCDTSSN 240 FISGMLSSHK DAKMEAKELP VGLMMVSSDH SEKCSFVVPA AGFSGRESTK RRTWAVKKQD 300 NSMTIDGRTS RRSSQDDRVP TMSTRDSPST SIARPCLPVH PFTFMVKKAI RFRRTQLCTK 360 VEVVERFRTV PIEELSFLRP TSKSQHGIGS KKASPKPRYS KAETENSKLQ RRGEMTVGGQ 420 QGEVRSLSDV LETTRSGCNS QKMDKESVRK TESARQVVNF DANTTARCRE VDVVCETVLL 480 PERVSGKDQK AVSDLNSNQL LLKPDTKSFK AVTKPAVQHP SKHGDEQSSA SFNQGFAHTH 540 HLPKAFRRQG ATVEMDLKQQ KSLFPVLIGA AATNKTSFAS NDSVLTNQNL KALKFPRKVK 600 KNFHNSFPVP GSEKRFSDTK VYPSRESSVF DSAALHDDIL QDVNMVNPKE ELKVQMPPAA 660 TSSPDEESMS STTAPVKQDF KHREERPLTP GLTEMHWENL LQKTDFLSQP PQDLVLHECF 720 QCGRTFKPES LKVHLRGCHI INKPKPSVYF SKRVSTT*

Sequence ? help Back to Top

Protein Sequence Length: 758 aa Download sequence Send to blast

METHPEFYHK VEVLYILIQG NEQIGHPHMI QVQYPSHQQA PTLRDVKCRL TALRGRGMPD  60
LYSWSYKRSY KGNFIWCDVF DNDVILPLSG SGEYVLKALE VFEVSLDALD QEVAVHQVAA  120
QSAMRTLPRN RCRGTDQSPM QEQHLTEMHI IGNVCNTISS ILESKHDLLS DSGLNNIATK  180
VFSNYHIDIY NCGRPAFVSG DLIENNNAFE KIKVSDSSTC KCVSNGNEGI LAEPCDTSSN  240
FISGMLSSHK DAKMEAKELP VGLMMVSSDH SEKCSFVVPA AGFSGRESTK RRTWAVKKQD  300
NSMTIDGRTS RRSSQDDRVP TMSTRDSPST SIARPCLPVH PFTFMVKKAI RFRRTQLCTK  360
VEVVERFRTV PIEELSFLRP TSKSQHGIGS KKASPKPRYS KAETENSKLQ RRGEMTVGGQ  420
QGEVRSLSDV LETTRSGCNS QKMDKESVRK TESARQVVNF DANTTARCRE VDVVCETVLL  480
PERVSGKDQK AVSDLNSNQL LLKPDTKSFK AVTKPAVQHP SKHGDEQSSA SFNQGFAHTH  540
HLPKAFRRQG ATVEMDLKQQ KSLFPVLIGA AATNKTSFAS NDSVLTNQNL KALKFPRKVK  600
KNFHNSFPVP GSEKRFSDTK VYPSRESSVF DSAALHDDIL QDVNMVNPKE ELKVQMPPAA  660
TSSPDEESMS STTAPVKQDF KHREERPLTP GLTEMHWENL LQKTDFLSQP PQDLVLHECF  720
QCGRTFKPES LKVHLRGCHI INKPKPSVYF SKRVSTT*

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_024380107.1	0.0	uncharacterized protein LOC112284499 isoform X1
Refseq	XP_024380108.1	0.0	uncharacterized protein LOC112284499 isoform X1
TrEMBL	A9SGA8	0.0	A9SGA8_PHYPA; Predicted protein
STRING	PP1S75_191V6.1	0.0	(Physcomitrella patens)

Link Out ? help Back to Top
Phytozome	Pp3c7_12520V3.2.p
Entrez Gene	5928587

Publications ? help Back to Top
Rensing SA, et al. The Physcomitrella genome reveals evolutionary insights into the conquest of land by plants. Science, 2008. 319(5859): p. 64-9 [PMID:18079367]