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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Pp3c6_9520V3.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Bryophytina; Bryopsida; Funariidae; Funariales; Funariaceae; Physcomitrella
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Family | bHLH | ||||||||
Protein Properties | Length: 455aa MW: 49423.2 Da PI: 7.6236 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 29.2 | 1.7e-09 | 259 | 306 | 4 | 55 |
HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 +h+ +Er RR++i +++ L++l+P + sk Ka +L + ++Y++sLq Pp3c6_9520V3.1.p 259 SHSLAERVRREKISERMKFLQDLVPGC----SKITGKAVMLDEIINYVQSLQ 306 8**************************....899*****************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF47459 | 1.31E-16 | 253 | 324 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 1.78E-10 | 253 | 310 | No hit | No description |
Gene3D | G3DSA:4.10.280.10 | 3.6E-16 | 255 | 322 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
PROSITE profile | PS50888 | 15.663 | 255 | 305 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 1.0E-6 | 259 | 306 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 9.3E-9 | 261 | 311 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 455 aa Download sequence Send to blast |
MDKLRAVEYP ISLAMDPSIG GQALHEVSTQ HSLQQLSYDP SFAERAAKYS TFGSSNYAQR 60 PQTYSAFDTG KLREMLKNEI KIPRSSSFNR LGNMGTNSDM SQFGEEEMNL KRDEAHPNLE 120 AGLEAIEGAN RARASALNES SDGLSQENSS GSQQTGLQSN RSAAPPRKRK GSSIAEEKGK 180 TSTSSVVSDG KNSKSLEANE QTSLKRQRSG LVKAERSASE NSGDSASPRS LKATSKPPQD 240 LSKQDYIHVR ARRGQATDSH SLAERVRREK ISERMKFLQD LVPGCSKITG KAVMLDEIIN 300 YVQSLQRQIE FLSMKLAAVN PRLDYSYDLL GKDMLQSRSP ETTLLGPDPL CGYGEMHHGQ 360 VHHSMHMSSG CSLDMRGAES VCDAYLRHSM SMPTLGSLVS ADDFGDPLSQ VCGNGDLQSV 420 VEMGFIQGRQ GLGFGSQVSH GSSLCLSGKL KVEL* |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00660 | PBM | 25215497 | Download |
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Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_024379149.1 | 0.0 | transcription factor bHLH74-like isoform X1 | ||||
Refseq | XP_024379151.1 | 0.0 | transcription factor bHLH74-like isoform X1 | ||||
Refseq | XP_024379152.1 | 0.0 | transcription factor bHLH74-like isoform X1 | ||||
Refseq | XP_024379153.1 | 0.0 | transcription factor bHLH74-like isoform X1 | ||||
TrEMBL | A0A2K1KF05 | 0.0 | A0A2K1KF05_PHYPA; Uncharacterized protein | ||||
STRING | PP1S270_17V6.1 | 0.0 | (Physcomitrella patens) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Representative plant | OGRP58 | 16 | 313 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G07340.1 | 1e-53 | bHLH family protein |
Link Out ? help Back to Top | |
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Phytozome | Pp3c6_9520V3.1.p |