PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pp3c6_8320V3.1.p
Common NamePHYPADRAFT_171257
Organism
Physcomitrella patens
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Bryophytina; Bryopsida; Funariidae; Funariales; Funariaceae; Physcomitrella
Family bHLH
Protein Properties Length: 625aa    MW: 67212.4 Da    PI: 6.7943
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pp3c6_8320V3.1.pgenomeCOSMOSSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH16.91.1e-05547590755
                       HHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
               HLH   7 erErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                       ++ r RR++  +++  L+ l+P+      ++l+ + +L ++ eY++ Lq
  Pp3c6_8320V3.1.p 547 IAARTRREKFTDRIRILQGLVPNG-----ERLDTVHMLSQTFEYVRFLQ 590
                       5679******************96.....6******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000838.29E-7533593No hitNo description
PROSITE profilePS5088812.474540589IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474596.94E-10543602IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.103.1E-9545604IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.6E-7546595IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0045944Biological Processpositive regulation of transcription from RNA polymerase II promoter
GO:0005634Cellular Componentnucleus
GO:0001046Molecular Functioncore promoter sequence-specific DNA binding
GO:0001228Molecular Functiontranscriptional activator activity, RNA polymerase II transcription regulatory region sequence-specific binding
GO:0046983Molecular Functionprotein dimerization activity
Plant Ontology ? help Back to Top
PO Term PO Category PO Description
PO:0000006anatomyplant protoplast
PO:0025017anatomyplant spore
PO:0030003anatomyprotonema
PO:0030018anatomygametophore
Sequence ? help Back to Top
Protein Sequence    Length: 625 aa     Download sequence    Send to blast
MVARVEECFL GREQAFGTSK QPWKWSVASN LVAQGVKDGE ATNINMLYAA SHNDMLHDAS  60
RTGDLSSWTN YRSDMQGSSK GLFGVHHSSL QHHQSLNSDT VPEPVQNDSI LMNSNYLSSY  120
FMAQRQAASA ITLAPGRAGV NTLAPGLARN PTSESIKNIG SCSTPSFCVG SPSPSTVFPS  180
HPSDLGSRDS SDMLLLNLEQ QAVDTYSESR VQPQLSDPSQ SKNSLSYSSG EERDAIVNYV  240
DSFWSAQGAN GDAILPELRF DAMLDDTADT GACGLSFPVV EMGPLLPARE IGHHSNPRSV  300
QRGSAMAASL SAMTHAASAP DFCQSYLVGG VGTAENAIVG NRTTHGNKPS QLAIPAKQSS  360
VAAVNTSSDH PARLCWSDES WFGSQYPVGS GSLESSKQPD IKSPTSFAGS SPSSPTTPLD  420
IHLFASSTLQ GPSSARSTSS VLKAEEIQKR LTEFNVDGSN TNKRSFSTMQ STSHGGNPLG  480
RSSIPGAKDI LSRVHGGVNT DKFDAAALSA LLYSNNRGNE DFRSNVVSPP APKQRRRHGT  540
ATDPQSIAAR TRREKFTDRI RILQGLVPNG ERLDTVHMLS QTFEYVRFLQ HKVWDLYNNK  600
DSMSEVKCEK WKEFIDASTG QVIV*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Ppa.120150.0protonema
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024375879.10.0uncharacterized protein LOC112282486
TrEMBLA0A2K1KEU40.0A0A2K1KEU4_PHYPA; Uncharacterized protein
STRINGPP1S282_80V6.10.0(Physcomitrella patens)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP1677723
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G30980.11e-15LJRHL1-like 2
Publications ? help Back to Top
  1. Rensing SA, et al.
    The Physcomitrella genome reveals evolutionary insights into the conquest of land by plants.
    Science, 2008. 319(5859): p. 64-9
    [PMID:18079367]