PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Pp3c6_28230V3.3.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Bryophytina; Bryopsida; Funariidae; Funariales; Funariaceae; Physcomitrella
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Family | NAC | ||||||||
Protein Properties | Length: 407aa MW: 45299.9 Da PI: 7.8189 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 171.4 | 2.7e-53 | 15 | 142 | 1 | 128 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkev 92 lppGfrFhPtdeelv +yL++k++++ +++ vi+ev++yk++PwdLp k+ +e+ewyfFs+rd+ky++g r+nra++sgyWkatg+dk++ Pp3c6_28230V3.3.p 15 LPPGFRFHPTDEELVLHYLRRKADSHVFQI-PVIAEVNLYKFDPWDLPDKALFGEREWYFFSPRDRKYPNGARPNRAAASGYWKATGTDKPI 105 79***************************9.89***************8777899************************************* PP NAM 93 lsk.kgelvglkktLvfykgrapkgektdWvmheyrl 128 + + ++++vg+kk Lvfy+g+apkgekt+W+mheyrl Pp3c6_28230V3.3.p 106 HMTnGHSKVGVKKALVFYRGKAPKGEKTNWIMHEYRL 142 99856778***************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 3.27E-63 | 6 | 171 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 61.097 | 15 | 171 | IPR003441 | NAC domain |
Pfam | PF02365 | 2.9E-28 | 16 | 142 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 407 aa Download sequence Send to blast |
MVIMETGGSI SQLQLPPGFR FHPTDEELVL HYLRRKADSH VFQIPVIAEV NLYKFDPWDL 60 PDKALFGERE WYFFSPRDRK YPNGARPNRA AASGYWKATG TDKPIHMTNG HSKVGVKKAL 120 VFYRGKAPKG EKTNWIMHEY RLAEGVSPSA HHHRRGSLRL DDWVLCRIYE KCTHAQRAGK 180 EHDRASVEDV LASLPEIDDP NHMLPRLNSM GMMESAQQQA LVDSMLTKGP SDDGCSLSVS 240 IDSLQRGMIS SNPDVAAHEL QTSTLTNEWK MQVSLDSTPN HLIGYDFQNE LGSVSSAMRP 300 TLNIRPSMAG SAMTHFQNPQ RSSNNIGARM VARSMPVPPG RAASDEEVQS TLRSSTTRFG 360 NGNEGLESMF PTMGNFDQQA QSTSPYTRNT MAYNLPYGHG SLGTFN* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
3swm_A | 6e-80 | 1 | 177 | 7 | 174 | NAC domain-containing protein 19 |
3swm_B | 6e-80 | 1 | 177 | 7 | 174 | NAC domain-containing protein 19 |
3swm_C | 6e-80 | 1 | 177 | 7 | 174 | NAC domain-containing protein 19 |
3swm_D | 6e-80 | 1 | 177 | 7 | 174 | NAC domain-containing protein 19 |
3swp_A | 6e-80 | 1 | 177 | 7 | 174 | NAC domain-containing protein 19 |
3swp_B | 6e-80 | 1 | 177 | 7 | 174 | NAC domain-containing protein 19 |
3swp_C | 6e-80 | 1 | 177 | 7 | 174 | NAC domain-containing protein 19 |
3swp_D | 6e-80 | 1 | 177 | 7 | 174 | NAC domain-containing protein 19 |
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Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Ppa.2690 | 1e-117 | protonema |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Expressed in leaves and in root pericycle and epidermis. {ECO:0000269|PubMed:15319476, ECO:0000269|PubMed:16581911}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factors that bind specifically to the 5'-CATGTG-3' motif. {ECO:0000269|PubMed:15319476}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Strongly induced by drought, high salinity and abscisic acid (ABA). Slightly up-regulated by cold treatment. Not induced by jasmonic acid. {ECO:0000269|PubMed:15319476, ECO:0000269|Ref.7}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_024378704.1 | 0.0 | NAC domain-containing protein 67-like | ||||
Swissprot | Q93VY3 | 1e-84 | NAC72_ARATH; NAC domain-containing protein 72 | ||||
TrEMBL | A0A2K1KHE6 | 0.0 | A0A2K1KHE6_PHYPA; Uncharacterized protein | ||||
STRING | PP1S117_16V6.1 | 0.0 | (Physcomitrella patens) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G27410.2 | 5e-87 | NAC family protein |
Link Out ? help Back to Top | |
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Phytozome | Pp3c6_28230V3.3.p |
Publications ? help Back to Top | |||
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