PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Pp3c6_27690V3.3.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Bryophytina; Bryopsida; Funariidae; Funariales; Funariaceae; Physcomitrella
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Family | NAC | ||||||||
Protein Properties | Length: 417aa MW: 46481.9 Da PI: 6.5671 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 175.9 | 1.1e-54 | 18 | 145 | 1 | 128 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkev 92 lppGfrFhPtd+elv++yL +k+++ ++ + ++i++vd++k+ePwdLp k+k +ekewyfFs rd+ky+tg+r+nrat++gyWkatgkd++v Pp3c6_27690V3.3.p 18 LPPGFRFHPTDDELVSFYLVRKISNPQVVV-KTIPNVDLNKCEPWDLPDKAKVGEKEWYFFSLRDRKYPTGQRTNRATDKGYWKATGKDRDV 108 79*************************998.88***************99999*************************************** PP NAM 93 lsk.kgelvglkktLvfykgrapkgektdWvmheyrl 128 +++ ++ lvg+kktLvfy grapkg kt+W+mheyrl Pp3c6_27690V3.3.p 109 MNSgTHCLVGMKKTLVFYMGRAPKGLKTNWIMHEYRL 145 **855556***************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 8.76E-63 | 14 | 174 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 60.017 | 18 | 174 | IPR003441 | NAC domain |
Pfam | PF02365 | 1.2E-27 | 19 | 145 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 417 aa Download sequence Send to blast |
MCNGKNTIEM QQDSNLELPP GFRFHPTDDE LVSFYLVRKI SNPQVVVKTI PNVDLNKCEP 60 WDLPDKAKVG EKEWYFFSLR DRKYPTGQRT NRATDKGYWK ATGKDRDVMN SGTHCLVGMK 120 KTLVFYMGRA PKGLKTNWIM HEYRLGSDSS NHFNGQQSHR YKNNEWVVCR VFQKTGGSKT 180 LGLSSTDKAS YQPAAHLHYA LPGNHRDSSP NPTVTDSDDG DTCTAAESCH NSQDSYLDAG 240 VYVAQMLTQG DVTSVGAPQW AAPGSVPMAT PVMDIQPHNT MKESYYNHQN GANMSMLFSP 300 PPQNMVSYPL IPHIGNRMRP KQEPFYPTTC AGEDEAESSQ KLNKLDYAWT GDVLNPEYYP 360 CDSPLTPLQS IVGESGQTSS CLTDGNALHN RAFRGSFSGF QEMAGPIELT TQEWAY* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1ut4_A | 1e-53 | 14 | 174 | 13 | 165 | NO APICAL MERISTEM PROTEIN |
1ut4_B | 1e-53 | 14 | 174 | 13 | 165 | NO APICAL MERISTEM PROTEIN |
1ut7_A | 1e-53 | 14 | 174 | 13 | 165 | NO APICAL MERISTEM PROTEIN |
1ut7_B | 1e-53 | 14 | 174 | 13 | 165 | NO APICAL MERISTEM PROTEIN |
3swm_A | 1e-53 | 14 | 174 | 16 | 168 | NAC domain-containing protein 19 |
3swm_B | 1e-53 | 14 | 174 | 16 | 168 | NAC domain-containing protein 19 |
3swm_C | 1e-53 | 14 | 174 | 16 | 168 | NAC domain-containing protein 19 |
3swm_D | 1e-53 | 14 | 174 | 16 | 168 | NAC domain-containing protein 19 |
3swp_A | 1e-53 | 14 | 174 | 16 | 168 | NAC domain-containing protein 19 |
3swp_B | 1e-53 | 14 | 174 | 16 | 168 | NAC domain-containing protein 19 |
3swp_C | 1e-53 | 14 | 174 | 16 | 168 | NAC domain-containing protein 19 |
3swp_D | 1e-53 | 14 | 174 | 16 | 168 | NAC domain-containing protein 19 |
3ulx_A | 1e-53 | 9 | 174 | 6 | 168 | Stress-induced transcription factor NAC1 |
4dul_A | 1e-53 | 14 | 174 | 13 | 165 | NAC domain-containing protein 19 |
4dul_B | 1e-53 | 14 | 174 | 13 | 165 | NAC domain-containing protein 19 |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Ppa.7271 | 0.0 | protonema |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00662 | PBM | 25215497 | Download |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_024378753.1 | 0.0 | NAC domain-containing protein 92-like | ||||
Refseq | XP_024378754.1 | 0.0 | NAC domain-containing protein 92-like | ||||
TrEMBL | A0A2K1KHE3 | 0.0 | A0A2K1KHE3_PHYPA; Uncharacterized protein | ||||
STRING | PP1S279_85V6.1 | 0.0 | (Physcomitrella patens) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G24430.2 | 4e-74 | NAC domain containing protein 38 |
Link Out ? help Back to Top | |
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Phytozome | Pp3c6_27690V3.3.p |