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Plant Transcription
Factor Database
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Transcription Factor Information
|
Basic
Information? help
Back to Top |
| TF ID |
Pp3c6_2730V3.2.p |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Bryophytina; Bryopsida; Funariidae; Funariales; Funariaceae; Physcomitrella
|
| Family |
HD-ZIP |
| Protein Properties |
Length: 344aa MW: 38435.1 Da PI: 4.904 |
| Description |
HD-ZIP family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| Pp3c6_2730V3.2.p | genome | COSMOSS | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | Homeobox | 55.4 | 1e-17 | 85 | 138 | 3 | 56 |
--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
Homeobox 3 kRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56
k++++t +q++ Le Fe ++++ e++ +LAk+lgL+ rqV vWFqNrRa++k
Pp3c6_2730V3.2.p 85 KKRRLTFDQVRSLEYNFEIENKLEPERKMQLAKELGLQPRQVAVWFQNRRARWK 138
45578999*********************************************9 PP
|
| 2 | HD-ZIP_I/II | 121.8 | 3.4e-39 | 84 | 176 | 1 | 93 |
HD-ZIP_I/II 1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreelke 93
ekkrrl+ +qv++LE +Fe e+kLeperK++la+eLglqprqvavWFqnrRAR+ktkqlE+dye+L y++lk+e +++ +e++eL++++k+
Pp3c6_2730V3.2.p 84 EKKRRLTFDQVRSLEYNFEIENKLEPERKMQLAKELGLQPRQVAVWFQNRRARWKTKQLERDYEVLNLDYNRLKKEFDAVIQEKQELQDAVKT 176
69**************************************************************************************99986 PP
|
| Gene Ontology ? help Back to Top |
| GO Term |
GO Category |
GO Description |
| GO:0006355 | Biological Process | regulation of transcription, DNA-templated |
| GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
| GO:0043565 | Molecular Function | sequence-specific DNA binding |
| Sequence ? help Back to Top |
| Protein Sequence Length: 344 aa
Download sequence Send
to blast |
MASLGRGYGG SNVTLVRNES SNDTFVAMLT SCSPVTLQVQ RADGSLEDAV TSFDKKRPFC 60
AAFEASGEDP AEEEIGDDFT QQVEKKRRLT FDQVRSLEYN FEIENKLEPE RKMQLAKELG 120
LQPRQVAVWF QNRRARWKTK QLERDYEVLN LDYNRLKKEF DAVIQEKQEL QDAVKTLKEK 180
SPMPQPSPAG NPQEKLKKPK TATQPSPPRT SEAPVKLERT SAAHKARNGD LTRPHVGAGL 240
RVTFSSDSLS SEILNADSPH TTSDSVSLPS LDQITTDGLI SGNSMVDSSI MDMSDSICDQ 300
ILSPLACQRV SVKLEEGSCQ DDSCNYILSH LYEEKCVPWW DWP*
|
| Nucleic Localization
Signal ? help
Back to Top |
 |
| No. |
Start |
End |
Sequence |
| 1 | 132 | 140 | RRARWKTKQ |
