PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Pp3c6_26080V3.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Bryophytina; Bryopsida; Funariidae; Funariales; Funariaceae; Physcomitrella
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Family | ERF | ||||||||
Protein Properties | Length: 482aa MW: 52805.8 Da PI: 6.9874 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 56.6 | 6.4e-18 | 202 | 251 | 3 | 55 |
AP2 3 ykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 y+GVr+++ +g+++AeIrd +ng +r++lg+++ta++Aa a+++a+ +++g Pp3c6_26080V3.1.p 202 YRGVRRRP-WGKFAAEIRDSAQNG--ARIWLGTYDTAYDAACAYDQAAFEMRG 251 9*******.**********65565..*************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00380 | 3.6E-34 | 201 | 265 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 3.53E-27 | 201 | 259 | No hit | No description |
PROSITE profile | PS51032 | 22.471 | 201 | 259 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 6.6E-29 | 201 | 260 | IPR001471 | AP2/ERF domain |
Pfam | PF00847 | 4.9E-12 | 202 | 251 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 4.1E-12 | 202 | 213 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 7.85E-21 | 202 | 260 | IPR016177 | DNA-binding domain |
PRINTS | PR00367 | 4.1E-12 | 241 | 261 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 482 aa Download sequence Send to blast |
MNRTLVEKMA VLPYSSVPRT TMQSQGMIEK FRHYLLEDDD NCLAEEHFLQ PANMVGLSGD 60 MSTEAFFKSL VSPMPSPRGR LGCEETKPIS ARDGSEISET IDAQELSDGQ SQSVFRDHEG 120 NVDGWCDATP YSKVDPCSTE IEPSSQGTEP SSMAGGRSSP AQQASSVDQK SKSNDSVPVH 180 NSESSPTVAR APIQKPPRSL NYRGVRRRPW GKFAAEIRDS AQNGARIWLG TYDTAYDAAC 240 AYDQAAFEMR GCKALLNFPL KANIYAANLS AKNSKDHHAY DSTHPGSPVR MTPKHIQVPV 300 SMSAERLLSH HQGESFPTSS SSSSYGSPNF SGSRVSPGSL PMQSSPSGGL SPELQFRAAL 360 WLQRAAASIQ ESSSLSPYVQ MAQLLGARQR IAAVPSYYDE FVASQQIPDA RGYPFSPQAA 420 MDFHDAFAQL QSATSPLMDL PAATSFRSGL KRSRSREMWE ESVKRTCHVD RWQHQVPVRF 480 Y* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2gcc_A | 3e-27 | 201 | 263 | 5 | 67 | ATERF1 |
3gcc_A | 3e-27 | 201 | 263 | 5 | 67 | ATERF1 |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 450 | 455 | KRSRSR |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Ppa.3257 | 0.0 | gametophore |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_024378247.1 | 0.0 | uncharacterized protein LOC112283586 | ||||
TrEMBL | A0A2K1KH57 | 0.0 | A0A2K1KH57_PHYPA; Uncharacterized protein | ||||
STRING | PP1S53_80V6.1 | 0.0 | (Physcomitrella patens) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G17500.1 | 3e-23 | ethylene responsive element binding factor 1 |
Link Out ? help Back to Top | |
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Phytozome | Pp3c6_26080V3.1.p |