PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pp3c6_15220V3.12.p
Common NamePHYPADRAFT_168958
Organism
Physcomitrella patens
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Bryophytina; Bryopsida; Funariidae; Funariales; Funariaceae; Physcomitrella
Family C3H
Protein Properties Length: 1150aa    MW: 124461 Da    PI: 7.4221
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pp3c6_15220V3.12.pgenomeCOSMOSSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH30.75.2e-101436527
                        --SGGGGTS--TTTTT-SS-SSS CS
             zf-CCCH  5 lCrffartGtCkyGdrCkFaHgp 27
                         Cr++a +GtC +Gd+C+FaH p
  Pp3c6_15220V3.12.p 14 TCRYWATSGTCFFGDQCNFAHNP 36
                        7********************85 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5010315.366937IPR000571Zinc finger, CCCH-type
SMARTSM003562.0E-51036IPR000571Zinc finger, CCCH-type
SuperFamilySSF902292.62E-61238IPR000571Zinc finger, CCCH-type
PfamPF006427.0E-71436IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.108.6E-81538IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010310.3524776IPR000571Zinc finger, CCCH-type
SMARTSM003566.34975IPR000571Zinc finger, CCCH-type
HamapMF_0318125.0634671119IPR030844PAB-dependent poly(A)-specific ribonuclease subunit PAN3
PROSITE profilePS500119.2347411048IPR000719Protein kinase domain
CDDcd001803.95E-10751899No hitNo description
SuperFamilySSF561129.78E-13753971IPR011009Protein kinase-like domain
Gene3DG3DSA:3.30.200.206.1E-4757816No hitNo description
Gene3DG3DSA:1.10.510.104.3E-6817912No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0000289Biological Processnuclear-transcribed mRNA poly(A) tail shortening
GO:0006397Biological ProcessmRNA processing
GO:0006468Biological Processprotein phosphorylation
GO:0031251Cellular ComponentPAN complex
GO:0004672Molecular Functionprotein kinase activity
GO:0005524Molecular FunctionATP binding
GO:0044822Molecular Functionpoly(A) RNA binding
GO:0046872Molecular Functionmetal ion binding
Plant Ontology ? help Back to Top
PO Term PO Category PO Description
PO:0000006anatomyplant protoplast
PO:0025017anatomyplant spore
PO:0030003anatomyprotonema
PO:0030018anatomygametophore
Sequence ? help Back to Top
Protein Sequence    Length: 1150 aa     Download sequence    Send to blast
MSASPHKPPP SNVTCRYWAT SGTCFFGDQC NFAHNPADRA ASGRSVPKRE KACKELLLTG  60
YCKNEKNGCE YNHEIPGVIR AGPPSASSST TTNVAASPVF SSWPSTTSTT LSPGRTAAAI  120
RNNRLPVSAP AFVPAAVAAA QRASLSAWGG VTPGSGKRTA VTSQTTLTST SPTQNDIISV  180
SSGQTSVDAQ TTSDLAALVQ KAEVRIAPVT VSSGVSVSTP LSSTFSNSLL NAQPFIPSLS  240
SANSGSSNGP TQGASVGSAN ATPFVPSGGS VASAISAAPF IPRSRQHLVT GATTGGVPAS  300
IDRALQPANQ SLVALDGSVP QQQLQMRQQL SPQMQQQIQH QAAAQAQVQA QAQAQAQAQA  360
QMLAAAARSM GGNVLNNNQY VGMEVPMVIP SFRLPDGDDP ALGMTAMSPP NPAFLARAQL  420
HQHMQNLQLQ QQHQVFSGQS SLYSLRPPQR TGAQTPEKQQ QQQMLSTQSE QQSQSPPYSL  480
RVSQSLGAQT AEKSLFLGSQ AEGSGFVPSS LALLSEKQVQ EHMSPSPERQ ESDQLSMQSS  540
ESNGPQQSTQ QSGQIQNSQQ QSSLEQHHHQ QQVQIQQHLQ LQALQQQQMR HRMQQQSHQS  600
QQSQQPQHFQ QQAQGQRTLS GTGYSQQRLP SMRSASPVSG VSTVAAATHG GATYFLGPGQ  660
GISSLSHAFS SPNSRNESRS ARSQFPAGTA PLGSRFISDQ LREELRRRHT LIHAQLDPEQ  720
DLVDLPEMVQ RFHSLYPLED VNRDDDIPST SFGVRTMVFK GISSLDGQAY AIRRIDGRQV  780
IPTVELAATA IEAVERWAPF TRHPHIVAIR ESFVSREVED TPALFFVHDY YPAAYTLQSM  840
HLQQEQAGGV VHLTVSEEQL WSYMVQLATV LRAVHGAGLY FRPGGLHPSK IIVTSKGRIR  900
VSSVGILDVL HGDPADEVRV FQKEDLAGCG RLVLALACGS TANASLEFMG SHYSNEIVRV  960
TQHLLASSPE KSEGVGFSNI RQLHSFLADR MFSEIENVHM QNDEIMTELS KEAENGRLLR  1020
ILVKLGMMNE RPETDMDPGW SENGDRYLLK LFRDFVFHQT SEEGTPVIDW GHVIECLNKL  1080
DAGVPEKLIL LSRDERSMLI ASYADLKRCL ENVYQELLAR ASGDKGRVAL PQSMLVQSQA  1140
RLSQRLHAS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4bwp_A2e-7469911239448PAB-DEPENDENT POLY(A)-SPECIFIC RIBONUCLEASE SUBUNIT PAN-3
4bwp_B2e-7469911239448PAB-DEPENDENT POLY(A)-SPECIFIC RIBONUCLEASE SUBUNIT PAN-3
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Ppa.170770.0protonema
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024378278.10.0PAN2-PAN3 deadenylation complex subunit pan3-like isoform X4
TrEMBLA0A2K1KFQ30.0A0A2K1KFQ3_PHYPA; PAN2-PAN3 deadenylation complex subunit PAN3
STRINGPP1S195_2V6.10.0(Physcomitrella patens)
Publications ? help Back to Top
  1. Rensing SA, et al.
    The Physcomitrella genome reveals evolutionary insights into the conquest of land by plants.
    Science, 2008. 319(5859): p. 64-9
    [PMID:18079367]