PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pp3c6_13660V3.1.p
Organism
Physcomitrella patens
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Bryophytina; Bryopsida; Funariidae; Funariales; Funariaceae; Physcomitrella
Family C3H
Protein Properties Length: 635aa    MW: 67053.9 Da    PI: 6.9949
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pp3c6_13660V3.1.pgenomeCOSMOSSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH26.61e-08254274526
                        --SGGGGTS--TTTTT-SS-SS CS
            zf-CCCH   5 lCrffartGtCkyGdrCkFaHg 26 
                         C++f++ G C++Gd C FaHg
  Pp3c6_13660V3.1.p 254 ACPDFRK-GSCRRGDACEFAHG 274
                        7******.*************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003566.3E-6249275IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.807250276IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.102.5E-5254276IPR000571Zinc finger, CCCH-type
PfamPF006427.2E-7254274IPR000571Zinc finger, CCCH-type
SMARTSM0035611284307IPR000571Zinc finger, CCCH-type
PROSITE profilePS501037.085284308IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006979Biological Processresponse to oxidative stress
GO:0009867Biological Processjasmonic acid mediated signaling pathway
GO:0010150Biological Processleaf senescence
GO:0005634Cellular Componentnucleus
GO:0005886Cellular Componentplasma membrane
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 635 aa     Download sequence    Send to blast
MLAVLQRQQE RQFVGGGRES PFMSGGAGGL ASLDGGGSSS LSLYESMVDY VPMSQHVQAQ  60
HAMRRLNSFS PAAMHDAEAP VDGASGGVYQ RSHSFGGGGS AGLHAFNNFF SSPPSSPVSR  120
GEFSGFSMAD EESLIEAGSG KGGFFEEAGK GAGRADLRGL SLGPASPLGA GGSSMGSPTF  180
SDALFNKFLP SNNEDEEAWP VVDMYGCDQF RMFEFKVRRC MRGRSHDWTE CPFAHPGEKA  240
RRRDPRRYHY SGTACPDFRK GSCRRGDACE FAHGVFECWL HPARYRTQPC KDGRNCRRRV  300
CFFAHTPEQL RLLPAAAQAA TTGGRSGGGY DGSPRAGAAA SYDGAFGYES LSYDGASGVH  360
GLSHLSGYSS SAHSGAGCVA SQNSSPRSTL VGHAQYPPPL SPPLSPSGSP PPSPGSAEEW  420
GANAGSFASG SMSGAQSGMS LQATLQQAAQ ARGLGGHGQT SAVPAHRRHL DRLNSMPTLS  480
IPSAGEHRGL HSGMHPGSAP TSPAGVPQKS MMELIATLQQ LEIRGAPPAS AAQWLQQQYT  540
TGPSPLRRCS QSVPGTPTKV SGRWDQKERW EVEENEDGEP AVQRVESGRD LRAKIYGRLS  600
RSSLNEAGSG VGDSPDLDWV NDLVEEEPEH SAGW*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1322328GGRSGGG
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024378736.10.0zinc finger CCCH domain-containing protein 35-like
RefseqXP_024378891.10.0zinc finger CCCH domain-containing protein 35-like isoform X1
TrEMBLA0A2K1KFH90.0A0A2K1KFH9_PHYPA; Uncharacterized protein
STRINGPP1S177_93V6.10.0(Physcomitrella patens)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP11701644
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G19810.16e-72C3H family protein