PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pp3c6_10890V3.1.p
Common NamePHYPADRAFT_230875
Organism
Physcomitrella patens
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Bryophytina; Bryopsida; Funariidae; Funariales; Funariaceae; Physcomitrella
Family C2H2
Protein Properties Length: 475aa    MW: 52312.2 Da    PI: 9.1448
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pp3c6_10890V3.1.pgenomeCOSMOSSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H219.52.7e-066789123
                       EEETTTTEEESSHHHHHHHHHHT CS
            zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                       y C++C++sF r  nL+ H r+H
  Pp3c6_10890V3.1.p 67 YICEICNQSFQRDQNLQMHKRRH 89
                       89********************9 PP
2zf-C2H213.70.00019144168123
                        EEETTTTEEESSHHHHHHHHHH..T CS
            zf-C2H2   1 ykCpdCgksFsrksnLkrHirt..H 23 
                        ++C +C+k +  +s++k H+++  H
  Pp3c6_10890V3.1.p 144 WRCDKCSKGYAVQSDYKAHLKLvaH 168
                        58******************97666 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576673.8E-56490No hitNo description
PfamPF139128.4E-56790IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.601.9E-56789IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS5015711.1366789IPR007087Zinc finger, C2H2
SMARTSM003550.00296789IPR015880Zinc finger, C2H2-like
PROSITE patternPS0002806989IPR007087Zinc finger, C2H2
SMARTSM00355100108138IPR015880Zinc finger, C2H2-like
PROSITE profilePS501578.683144168IPR007087Zinc finger, C2H2
SMARTSM003555.6144168IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280146168IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Plant Ontology ? help Back to Top
PO Term PO Category PO Description
PO:0000006anatomyplant protoplast
PO:0030003anatomyprotonema
PO:0030018anatomygametophore
Sequence ? help Back to Top
Protein Sequence    Length: 475 aa     Download sequence    Send to blast
MNVSPSVGGC HGALQLIPDC CNKALEFLPI AAESGANKRR RRPPGTPDPG AEVVALSTKA  60
LMESDKYICE ICNQSFQRDQ NLQMHKRRHK VPWKLPKRSN LGTHKRVFVC PEKSCLHHDP  120
SHALGDLVGI KKHYRRKHCT EKQWRCDKCS KGYAVQSDYK AHLKLVAHEA IVVNVVESFQ  180
VESFIEHQDS CGAVKHKRLQ SGVESERKLS HQSNTTGRNS CESPSQSSDT TQAISFAQSG  240
TWDTAARSAD STKVNEYELS RRIQENQTAY SVAMPPWLLD RRNQLELLSF TQRLPKSGFS  300
HVVASGSKIT GNKSHLSHDS RSQITRCSSI DLANHEVCYT LSKPLPTSPS SVDVNTPSLA  360
LSIRPCGTNV DLSTSVSSVD KKRSFSALEK EVLAFTDQRS QTSAGIRRIQ CNSLCLAPPG  420
SDLALSIFPE ILTQSQNRAS VDPAAPEMDT AVSLKDFLKQ AAPRLSFFPA VHSK*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024376932.10.0uncharacterized protein LOC112282945 isoform X2
TrEMBLA0A2K1KF680.0A0A2K1KF68_PHYPA; Uncharacterized protein
STRINGPP1S113_55V6.10.0(Physcomitrella patens)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP9516242
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G01940.33e-68C2H2-like zinc finger protein
Publications ? help Back to Top
  1. Rensing SA, et al.
    The Physcomitrella genome reveals evolutionary insights into the conquest of land by plants.
    Science, 2008. 319(5859): p. 64-9
    [PMID:18079367]