PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Pp3c6_10870V3.1.p | ||||||||
Common Name | PHYPADRAFT_230875 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Bryophytina; Bryopsida; Funariidae; Funariales; Funariaceae; Physcomitrella
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Family | C2H2 | ||||||||
Protein Properties | Length: 475aa MW: 52312.2 Da PI: 9.1448 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 19.5 | 2.7e-06 | 67 | 89 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 y C++C++sF r nL+ H r+H Pp3c6_10870V3.1.p 67 YICEICNQSFQRDQNLQMHKRRH 89 89********************9 PP | |||||||
2 | zf-C2H2 | 13.7 | 0.00019 | 144 | 168 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHH..T CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirt..H 23 ++C +C+k + +s++k H+++ H Pp3c6_10870V3.1.p 144 WRCDKCSKGYAVQSDYKAHLKLvaH 168 58******************97666 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF57667 | 3.8E-5 | 64 | 90 | No hit | No description |
Pfam | PF13912 | 8.4E-5 | 67 | 90 | IPR007087 | Zinc finger, C2H2 |
Gene3D | G3DSA:3.30.160.60 | 1.9E-5 | 67 | 89 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
PROSITE profile | PS50157 | 11.136 | 67 | 89 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 0.0029 | 67 | 89 | IPR015880 | Zinc finger, C2H2-like |
PROSITE pattern | PS00028 | 0 | 69 | 89 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 100 | 108 | 138 | IPR015880 | Zinc finger, C2H2-like |
PROSITE profile | PS50157 | 8.683 | 144 | 168 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 5.6 | 144 | 168 | IPR015880 | Zinc finger, C2H2-like |
PROSITE pattern | PS00028 | 0 | 146 | 168 | IPR007087 | Zinc finger, C2H2 |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003676 | Molecular Function | nucleic acid binding | ||||
GO:0046872 | Molecular Function | metal ion binding |
Plant Ontology ? help Back to Top | ||||||
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PO Term | PO Category | PO Description | ||||
PO:0000006 | anatomy | plant protoplast | ||||
PO:0030003 | anatomy | protonema | ||||
PO:0030018 | anatomy | gametophore |
Sequence ? help Back to Top |
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Protein Sequence Length: 475 aa Download sequence Send to blast |
MNVSPSVGGC HGALQLIPDC CNKALEFLPI AAESGANKRR RRPPGTPDPG AEVVALSTKA 60 LMESDKYICE ICNQSFQRDQ NLQMHKRRHK VPWKLPKRSN LGTHKRVFVC PEKSCLHHDP 120 SHALGDLVGI KKHYRRKHCT EKQWRCDKCS KGYAVQSDYK AHLKLVAHEA IVVNVVESFQ 180 VESFIEHQDS CGAVKHKRLQ SGVESERKLS HQSNTTGRNS CESPSQSSDT TQAISFAQSG 240 TWDTAARSAD STKVNEYELS RRIQENQTAY SVAMPPWLLD RRNQLELLSF TQRLPKSGFS 300 HVVASGSKIT GNKSHLSHDS RSQITRCSSI DLANHEVCYT LSKPLPTSPS SVDVNTPSLA 360 LSIRPCGTNV DLSTSVSSVD KKRSFSALEK EVLAFTDQRS QTSAGIRRIQ CNSLCLAPPG 420 SDLALSIFPE ILTQSQNRAS VDPAAPEMDT AVSLKDFLKQ AAPRLSFFPA VHSK* |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_024376932.1 | 0.0 | uncharacterized protein LOC112282945 isoform X2 | ||||
TrEMBL | A0A2K1KF68 | 0.0 | A0A2K1KF68_PHYPA; Uncharacterized protein | ||||
STRING | PP1S113_55V6.1 | 0.0 | (Physcomitrella patens) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Representative plant | OGRP95 | 16 | 242 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G01940.3 | 3e-68 | C2H2-like zinc finger protein |
Link Out ? help Back to Top | |
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Phytozome | Pp3c6_10870V3.1.p |
Entrez Gene | 5932536 |
Publications ? help Back to Top | |||
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