PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Pp3c5_740V3.2.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Bryophytina; Bryopsida; Funariidae; Funariales; Funariaceae; Physcomitrella
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Family | NAC | ||||||||
Protein Properties | Length: 411aa MW: 45837.6 Da PI: 9.1797 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 170.4 | 5.9e-53 | 15 | 142 | 1 | 128 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevls 94 lppGfrFhPtdeelv +yL++k++++ + + vi+evd+yk++PwdLp k+ +e+ewyfFs+rd+ky++g r+nra++sgyWkatg+dk+++ Pp3c5_740V3.2.p 15 LPPGFRFHPTDEELVLHYLRRKADSHVFLI-PVIAEVDLYKFDPWDLPDKALFGEREWYFFSPRDRKYPNGARPNRAAASGYWKATGTDKPIFM 107 79************************9888.88***************8777899*************************************99 PP NAM 95 k.kgelvglkktLvfykgrapkgektdWvmheyrl 128 + ++++vg+kk Lvfy+g+apkgekt+W+mheyrl Pp3c5_740V3.2.p 108 TnSHSKVGVKKALVFYRGKAPKGEKTNWIMHEYRL 142 856778***************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 1.96E-63 | 7 | 171 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 61.511 | 15 | 171 | IPR003441 | NAC domain |
Pfam | PF02365 | 3.8E-28 | 16 | 142 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 411 aa Download sequence Send to blast |
MVTMETTGSL AQLQLPPGFR FHPTDEELVL HYLRRKADSH VFLIPVIAEV DLYKFDPWDL 60 PDKALFGERE WYFFSPRDRK YPNGARPNRA AASGYWKATG TDKPIFMTNS HSKVGVKKAL 120 VFYRGKAPKG EKTNWIMHEY RLAEGVSPPA RHHRRGSLRL DDWVLCRIYE KCTHAQRAGM 180 EHDTSSVQKM LASLPKIDNP NHMLPGLNTV SMTESAQHMA MINSMLAKNT SDDGCSLPAS 240 ISTLQRGMMS SDSGIAVHDL HTGNMASGWK GQSFMDYTGN QNLRYNTQQE LEAGSSSPRP 300 TLNIRSSMAG SVVPQFQHPH RSYSNFGPRI VEKPMPPAPG RSASDQEVQS SFRSTMQFTN 360 GTSCNEGLES MFPEIGNFDH QTQSTISSYS RPGMGYSTFS YRHGASSSLN * |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
3swm_A | 5e-81 | 4 | 177 | 9 | 174 | NAC domain-containing protein 19 |
3swm_B | 5e-81 | 4 | 177 | 9 | 174 | NAC domain-containing protein 19 |
3swm_C | 5e-81 | 4 | 177 | 9 | 174 | NAC domain-containing protein 19 |
3swm_D | 5e-81 | 4 | 177 | 9 | 174 | NAC domain-containing protein 19 |
3swp_A | 5e-81 | 4 | 177 | 9 | 174 | NAC domain-containing protein 19 |
3swp_B | 5e-81 | 4 | 177 | 9 | 174 | NAC domain-containing protein 19 |
3swp_C | 5e-81 | 4 | 177 | 9 | 174 | NAC domain-containing protein 19 |
3swp_D | 5e-81 | 4 | 177 | 9 | 174 | NAC domain-containing protein 19 |
Search in ModeBase |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00058 | PBM | Transfer from AT1G61110 | Download |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_024375722.1 | 0.0 | NAC domain-containing protein 2-like | ||||
TrEMBL | A0A2K1KHZ8 | 0.0 | A0A2K1KHZ8_PHYPA; Uncharacterized protein | ||||
STRING | PP1S259_83V6.1 | 0.0 | (Physcomitrella patens) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G61110.1 | 5e-85 | NAC domain containing protein 25 |
Link Out ? help Back to Top | |
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Phytozome | Pp3c5_740V3.2.p |