PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pp3c5_6880V3.1.p

Organism

Physcomitrella patens

Taxonomic ID

3218

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Bryophytina; Bryopsida; Funariidae; Funariales; Funariaceae; Physcomitrella

Family

C2H2

Protein Properties

Length: 341aa MW: 37042.3 Da PI: 7.8264

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pp3c5_6880V3.1.p	genome	COSMOSS	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	13.7	0.00018	110	132	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 + C+ C++ F++ L H+++H Pp3c5_6880V3.1.p 110 FNCNFCTRNFRTAQALGGHMNVH 132 78*******************99 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:3.30.160.60	1.5E-4	108	138	IPR013087	Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamily	SSF57667	1.31E-6	108	139	No hit	No description
PROSITE profile	PS50157	11.385	110	137	IPR007087	Zinc finger, C2H2
PROSITE pattern	PS00028	0	112	132	IPR007087	Zinc finger, C2H2

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003676	Molecular Function	nucleic acid binding
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 341 aa Download sequence Send to blast
MAPGEAGICS LSAAMADNFG KVPTLKKHTA LATDLIASIR NHDEMHILVQ MQYRDAHAAG 60 RHTATKRMNT VGNSKRSSMA SSTKAYDDIT VAVSRETSSH YDQYCPIRTF NCNFCTRNFR 120 TAQALGGHMN VHRRERAYSN ELLSDLHSEA RQIASCSVLN PLLAAQYVFP HVSEHMSTQL 180 TVGEGSTATS DRHISSSSTL CWLSSLSSPP LVTVSHNPSL NFCVPQALQH QQNALPNAPR 240 FYQVEQFHPA SPQALRRQSS SEQDANSCRV NSGSAQGSVP QGSVIGNVIP RNSSHNIVLG 300 SCYEIRSEAL SDFMSKQSFS EQSPGALQSG GEKLDLELHL *

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_024376645.1	0.0	uncharacterized protein LOC112282799
TrEMBL	A0A2K1KIR8	0.0	A0A2K1KIR8_PHYPA; Uncharacterized protein
STRING	PP1S186_7V6.1	0.0	(Physcomitrella patens)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G17810.1	1e-12	C2H2 family protein

Link Out ? help Back to Top
Phytozome	Pp3c5_6880V3.1.p