PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Pp3c5_6300V3.2.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Bryophytina; Bryopsida; Funariidae; Funariales; Funariaceae; Physcomitrella
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Family | LBD | ||||||||
Protein Properties | Length: 366aa MW: 39421.5 Da PI: 6.8965 | ||||||||
Description | LBD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF260 | 99.9 | 2.4e-31 | 2 | 103 | 1 | 97 |
DUF260 1 aCaaCkvlrrkCakdCvlapyf.....paeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqle 88 +C++C+vlr++C+++C+l+p++ ++q +++ +v+k+FG++ ++ +++a+pe++r+++++sl+yeA+ r+ +Pv Gavg+++++++q++ Pp3c5_6300V3.2.p 2 SCNGCRVLRKGCSDNCILRPCLqwietSEAQGHATVFVAKFFGRAGLMGFISAVPENQRSALFQSLLYEACGRTVNPVFGAVGLLWSGNWQIC 94 6*********************9998777889************************************************************* PP DUF260 89 qlkaelall 97 q++++++l Pp3c5_6300V3.2.p 95 QAAVDTVLK 103 **9998765 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50891 | 19.618 | 1 | 107 | IPR004883 | Lateral organ boundaries, LOB |
Pfam | PF03195 | 2.9E-26 | 2 | 100 | IPR004883 | Lateral organ boundaries, LOB |
Sequence ? help Back to Top |
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Protein Sequence Length: 366 aa Download sequence Send to blast |
MSCNGCRVLR KGCSDNCILR PCLQWIETSE AQGHATVFVA KFFGRAGLMG FISAVPENQR 60 SALFQSLLYE ACGRTVNPVF GAVGLLWSGN WQICQAAVDT VLKGGTLRPS SPSSLPSYTS 120 ANLSFAAPCF PALAMPGNFA TPAAGKVDDP IQITLSSNAP AENSLDQHTV SLGIGLPEDN 180 YAVSNERLIS CHDKMNSGSW HSEAVVAQNM ETNSTWRNDG QCDNWNPLHS AGEFQRDGLG 240 HKSNELKQRG THMRGEYVTP RRVKGRVQAS PEANFLSGER ACEELPVPGN GAEQLELDLT 300 LKVKGVKGEK TVGNKRQSSP CDSVKSEGSV TSLDSSVHEP PKPCNWALEM SLMPPTFRTL 360 LPLMQ* |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Ppa.6093 | 1e-123 | gametophore| protonema |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_024375699.1 | 0.0 | uncharacterized protein LOC112282397 | ||||
Refseq | XP_024375700.1 | 0.0 | uncharacterized protein LOC112282397 | ||||
TrEMBL | A0A2K1KIP4 | 0.0 | A0A2K1KIP4_PHYPA; Uncharacterized protein | ||||
STRING | PP1S41_47V6.1 | 0.0 | (Physcomitrella patens) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G67420.1 | 6e-66 | LOB domain-containing protein 37 |
Link Out ? help Back to Top | |
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Phytozome | Pp3c5_6300V3.2.p |