PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Pp3c5_570V3.2.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Bryophytina; Bryopsida; Funariidae; Funariales; Funariaceae; Physcomitrella
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Family | NAC | ||||||||
Protein Properties | Length: 416aa MW: 46840.4 Da PI: 6.3438 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 173.5 | 6.5e-54 | 18 | 146 | 1 | 129 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevls 94 lppGfrFhPtd+elv++yL++kv++ ++ + + i++v ++k+ePwdLp+k+k +ekewyfFs rd+ky+tg r+nrat++gyWkatgkd++v++ Pp3c5_570V3.2.p 18 LPPGFRFHPTDDELVSFYLTRKVKNPHFAV-KSIPNVSLNKCEPWDLPEKAKVGEKEWYFFSLRDRKYPTGIRTNRATEKGYWKATGKDRDVMN 110 79*************************999.78***************99999****************************************9 PP NAM 95 k.kgelvglkktLvfykgrapkgektdWvmheyrle 129 ++ lvg+kktLvfy grapkg kt+W+mheyrle Pp3c5_570V3.2.p 111 YsTHLLVGMKKTLVFYLGRAPKGAKTNWIMHEYRLE 146 845556****************************85 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 9.29E-61 | 15 | 174 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 58.522 | 18 | 174 | IPR003441 | NAC domain |
Pfam | PF02365 | 3.1E-28 | 19 | 145 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 416 aa Download sequence Send to blast |
MCNGKNTMET KQDCNIELPP GFRFHPTDDE LVSFYLTRKV KNPHFAVKSI PNVSLNKCEP 60 WDLPEKAKVG EKEWYFFSLR DRKYPTGIRT NRATEKGYWK ATGKDRDVMN YSTHLLVGMK 120 KTLVFYLGRA PKGAKTNWIM HEYRLENDLS NHLSNHESHQ SKNHEWVVCR VFQKTVGNKK 180 PSFMYAGMPS YQLADPLDAL PGNHRDNSPN PTVTDSDDCD TCTAAESFYK CQDSLRGGGD 240 HVAQEFRQDH AASVMAHQLP APGSIPIATP AMDLYQYNMM KEPYYNHQNG ADIVKLFSPP 300 PQSMISHPLT TVNGIRIRAK LEPSHNPYSE GEDEVESSQR LNNLDYAWPD DALNAEYFPC 360 DGSLLPLQSV AEDSSQTSTC FTDGSGLYNR SLRGSFSGLS EVAGPAMDVL QEWSY* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1ut4_A | 1e-51 | 9 | 180 | 8 | 171 | NO APICAL MERISTEM PROTEIN |
1ut4_B | 1e-51 | 9 | 180 | 8 | 171 | NO APICAL MERISTEM PROTEIN |
1ut7_A | 1e-51 | 9 | 180 | 8 | 171 | NO APICAL MERISTEM PROTEIN |
1ut7_B | 1e-51 | 9 | 180 | 8 | 171 | NO APICAL MERISTEM PROTEIN |
3swm_A | 1e-51 | 9 | 180 | 11 | 174 | NAC domain-containing protein 19 |
3swm_B | 1e-51 | 9 | 180 | 11 | 174 | NAC domain-containing protein 19 |
3swm_C | 1e-51 | 9 | 180 | 11 | 174 | NAC domain-containing protein 19 |
3swm_D | 1e-51 | 9 | 180 | 11 | 174 | NAC domain-containing protein 19 |
3swp_A | 1e-51 | 9 | 180 | 11 | 174 | NAC domain-containing protein 19 |
3swp_B | 1e-51 | 9 | 180 | 11 | 174 | NAC domain-containing protein 19 |
3swp_C | 1e-51 | 9 | 180 | 11 | 174 | NAC domain-containing protein 19 |
3swp_D | 1e-51 | 9 | 180 | 11 | 174 | NAC domain-containing protein 19 |
4dul_A | 1e-51 | 9 | 180 | 8 | 171 | NAC domain-containing protein 19 |
4dul_B | 1e-51 | 9 | 180 | 8 | 171 | NAC domain-containing protein 19 |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Ppa.10284 | 0.0 | protonema |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_024376187.1 | 0.0 | NAC domain-containing protein 2-like | ||||
TrEMBL | A0A2K1KHY9 | 0.0 | A0A2K1KHY9_PHYPA; Uncharacterized protein | ||||
STRING | PP1S259_58V6.1 | 0.0 | (Physcomitrella patens) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G53950.1 | 3e-74 | NAC family protein |
Link Out ? help Back to Top | |
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Phytozome | Pp3c5_570V3.2.p |