PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Pp3c5_20980V3.6.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Bryophytina; Bryopsida; Funariidae; Funariales; Funariaceae; Physcomitrella
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Family | C2H2 | ||||||||
Protein Properties | Length: 794aa MW: 86826.7 Da PI: 8.1248 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 17.6 | 1e-05 | 6 | 28 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 y+C++C++ F r nL+ H r+H Pp3c5_20980V3.6.p 6 YVCEICNQGFQRDQNLQMHRRRH 28 9*********************9 PP | |||||||
2 | zf-C2H2 | 14.4 | 0.00011 | 83 | 105 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 +kC +C+k + +s++k H++t+ Pp3c5_20980V3.6.p 83 WKCDKCSKGYAVQSDYKAHLKTC 105 58*******************98 PP | |||||||
3 | zf-C2H2 | 12.2 | 0.00055 | 111 | 131 | 3 | 23 |
ETTTTEEESSHHHHHHHHHHT CS zf-C2H2 3 CpdCgksFsrksnLkrHirtH 23 C dCg++Fsr +++ H+ t+ Pp3c5_20980V3.6.p 111 CCDCGRVFSRVESFIEHQDTC 131 ******************987 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF57667 | 3.24E-5 | 5 | 28 | No hit | No description |
Gene3D | G3DSA:3.30.160.60 | 3.6E-5 | 5 | 28 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
PROSITE profile | PS50157 | 10.97 | 6 | 28 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 0.0052 | 6 | 28 | IPR015880 | Zinc finger, C2H2-like |
PROSITE pattern | PS00028 | 0 | 8 | 28 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 83 | 47 | 77 | IPR015880 | Zinc finger, C2H2-like |
SuperFamily | SSF57667 | 3.24E-5 | 78 | 103 | No hit | No description |
SMART | SM00355 | 74 | 83 | 103 | IPR015880 | Zinc finger, C2H2-like |
PROSITE profile | PS50157 | 8.621 | 109 | 145 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 130 | 109 | 129 | IPR015880 | Zinc finger, C2H2-like |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009630 | Biological Process | gravitropism | ||||
GO:0009965 | Biological Process | leaf morphogenesis | ||||
GO:0010601 | Biological Process | positive regulation of auxin biosynthetic process | ||||
GO:0048444 | Biological Process | floral organ morphogenesis | ||||
GO:2000012 | Biological Process | regulation of auxin polar transport | ||||
GO:2000904 | Biological Process | regulation of starch metabolic process | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043621 | Molecular Function | protein self-association | ||||
GO:0044212 | Molecular Function | transcription regulatory region DNA binding | ||||
GO:0046872 | Molecular Function | metal ion binding | ||||
GO:0046982 | Molecular Function | protein heterodimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 794 aa Download sequence Send to blast |
MESDRYVCEI CNQGFQRDQN LQMHRRRHKV PWKLLKRPSL GTLKRVYVCP ERSCLHHDPS 60 HALGDLVGIK KHYRRKHCTE KQWKCDKCSK GYAVQSDYKA HLKTCGTRGH CCDCGRVFSR 120 VESFIEHQDT CSAVKYKSMH SGDGSERKLS LQRQATDRNS NESPSQSSDT TQAMSFAQSG 180 MSDTAARSAD STKVIDHEHS RRIQESQAAY NAVLPGWLLD QRKELELLPW KQRPPESVHP 240 DVLTSGSTMQ GDRRVVQPSH GSRSQVTLCS SINSVHPEVS CMGSKAISPS KCSEDVNAPS 300 LALSIGLFGA EVGSSTPSPI VDMKPSFSSV EREVLALTYQ QRQGSAGIPK IGTSSRSGAP 360 LGNDLALSMF PTNLVQTRNQ VAIDSAATGT DAAVSLSDFL MQAARRLGPS LTHSNAADYS 420 ELKAQETSSR TEMVLNYNHG VGSTSSCHED RAGKAHESDL SGLRPVRRGA LQHSQFEPAT 480 SMVRSRQATI DHTDVTETHE IFTSAHSIDI NVSRSQKQMA AAGTRGDQAC EQTWTDMSTA 540 WSDPATARRT KHQTRQESEE AEKELARAEV LKREAREQLQ LASAEREYAD RAREVAKRQI 600 ELSEADLAKA KRIREHAQAE LEKAQFLKER VERSVGASAS SQDSSQFSFC HSCKSAIEVN 660 ASIRTPTSSP GSSSWSFVTP PTSNCEQLQV GPGKSGISSG QIFMVPGSHE GGAKQADPSC 720 KLLSGRMSWT DTISARLPVS SEEGRKHIWP VGTTSMSTFA TSMAVEEASQ SEENLVAAAA 780 GSTWRRESIG AWG* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5b3h_C | 1e-18 | 80 | 134 | 4 | 58 | Zinc finger protein JACKDAW |
5b3h_F | 1e-18 | 80 | 134 | 4 | 58 | Zinc finger protein JACKDAW |
Search in ModeBase |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_024376933.1 | 0.0 | uncharacterized protein LOC112282945 isoform X3 | ||||
TrEMBL | A0A2K1KKJ4 | 0.0 | A0A2K1KKJ4_PHYPA; Uncharacterized protein | ||||
STRING | PP1S218_34V6.1 | 0.0 | (Physcomitrella patens) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G01940.1 | 1e-80 | C2H2-like zinc finger protein |
Link Out ? help Back to Top | |
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Phytozome | Pp3c5_20980V3.6.p |