PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pp3c5_20980V3.5.p
Organism
Physcomitrella patens
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Bryophytina; Bryopsida; Funariidae; Funariales; Funariaceae; Physcomitrella
Family C2H2
Protein Properties Length: 855aa    MW: 92965.8 Da    PI: 8.2532
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pp3c5_20980V3.5.pgenomeCOSMOSSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H217.51.1e-056789123
                       EEETTTTEEESSHHHHHHHHHHT CS
            zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                       y+C++C++ F r  nL+ H r+H
  Pp3c5_20980V3.5.p 67 YVCEICNQGFQRDQNLQMHRRRH 89
                       9*********************9 PP
2zf-C2H214.30.00012144166123
                        EEETTTTEEESSHHHHHHHHHHT CS
            zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                        +kC +C+k +  +s++k H++t+
  Pp3c5_20980V3.5.p 144 WKCDKCSKGYAVQSDYKAHLKTC 166
                        58*******************98 PP
3zf-C2H212.10.0006172192323
                        ETTTTEEESSHHHHHHHHHHT CS
            zf-C2H2   3 CpdCgksFsrksnLkrHirtH 23 
                        C dCg++Fsr +++  H+ t+
  Pp3c5_20980V3.5.p 172 CCDCGRVFSRVESFIEHQDTC 192
                        ******************987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.160.603.9E-56689IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576673.89E-56689No hitNo description
SMARTSM003550.00526789IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015710.976789IPR007087Zinc finger, C2H2
PROSITE patternPS0002806989IPR007087Zinc finger, C2H2
SMARTSM0035583108138IPR015880Zinc finger, C2H2-like
SuperFamilySSF576673.89E-5139164No hitNo description
SMARTSM0035574144164IPR015880Zinc finger, C2H2-like
PROSITE profilePS501578.621170206IPR007087Zinc finger, C2H2
SMARTSM00355130170190IPR015880Zinc finger, C2H2-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009630Biological Processgravitropism
GO:0009965Biological Processleaf morphogenesis
GO:0010601Biological Processpositive regulation of auxin biosynthetic process
GO:0048444Biological Processfloral organ morphogenesis
GO:2000012Biological Processregulation of auxin polar transport
GO:2000904Biological Processregulation of starch metabolic process
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043621Molecular Functionprotein self-association
GO:0044212Molecular Functiontranscription regulatory region DNA binding
GO:0046872Molecular Functionmetal ion binding
GO:0046982Molecular Functionprotein heterodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 855 aa     Download sequence    Send to blast
MNALPSAGGG HGALHLLPEG CNVVSEFLPL TAGSVVNKRK RRPAGTPDPG AEVVALSPKT  60
LMESDRYVCE ICNQGFQRDQ NLQMHRRRHK VPWKLLKRPS LGTLKRVYVC PERSCLHHDP  120
SHALGDLVGI KKHYRRKHCT EKQWKCDKCS KGYAVQSDYK AHLKTCGTRG HCCDCGRVFS  180
RVESFIEHQD TCSAVKYKSM HSGDGSERKL SLQRQATDRN SNESPSQSSD TTQAMSFAQS  240
GMSDTAARSA DSTKVIDHEH SRRIQESQAA YNAVLPGWLL DQRKELELLP WKQRPPESVH  300
PDVLTSGSTM QGDRRVVQPS HGSRSQVTLC SSINSVHPEV SCMGSKAISP SKCSEDVNAP  360
SLALSIGLFG AEVGSSTPSP IVDMKPSFSS VEREVLALTY QQRQGSAGIP KIGTSSRSGA  420
PLGNDLALSM FPTNLVQTRN QVAIDSAATG TDAAVSLSDF LMQAARRLGP SLTHSNAADY  480
SELKAQETSS RTEMVLNYNH GVGSTSSCHE DRAGKAHESD LSGLRPVRRG ALQHSQFEPA  540
TSMVRSRQAT IDHTDVTETH EIFTSAHSID INVSRSQKQM AAAGTRGDQA CEQTWTDMST  600
AWSDPATARR TKHQTRQESE EAEKELARAE VLKREAREQL QLASAEREYA DRAREVAKRQ  660
IELSEADLAK AKRIREHAQA ELEKAQFLKE RVERSVGASA SSQDSSQFSF CHSCKSAIEV  720
NASIRTPTSS PGSSSWSFVT PPTSNCEQLQ VGPGKSGISS GQIFMVPGSH EGGAKQADPS  780
CKLLSGRMSW TDTISARLPV SSEEGRKHIW PVGTTSMSTF ATSMAVEEAS QSEENLVAAA  840
AGSTWRRESI GAWG*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3h_C1e-18141195458Zinc finger protein JACKDAW
5b3h_F1e-18141195458Zinc finger protein JACKDAW
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024376932.10.0uncharacterized protein LOC112282945 isoform X2
TrEMBLA0A2K1KKJ40.0A0A2K1KKJ4_PHYPA; Uncharacterized protein
STRINGPP1S218_34V6.10.0(Physcomitrella patens)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G01940.13e-97C2H2-like zinc finger protein