PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pp3c5_20980V3.3.p
Organism
Physcomitrella patens
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Bryophytina; Bryopsida; Funariidae; Funariales; Funariaceae; Physcomitrella
Family C2H2
Protein Properties Length: 869aa    MW: 94466.4 Da    PI: 8.1051
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pp3c5_20980V3.3.pgenomeCOSMOSSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H217.51.1e-057698123
                       EEETTTTEEESSHHHHHHHHHHT CS
            zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                       y+C++C++ F r  nL+ H r+H
  Pp3c5_20980V3.3.p 76 YVCEICNQGFQRDQNLQMHRRRH 98
                       9*********************9 PP
2zf-C2H214.30.00012153175123
                        EEETTTTEEESSHHHHHHHHHHT CS
            zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                        +kC +C+k +  +s++k H++t+
  Pp3c5_20980V3.3.p 153 WKCDKCSKGYAVQSDYKAHLKTC 175
                        58*******************98 PP
3zf-C2H212.10.00061181201323
                        ETTTTEEESSHHHHHHHHHHT CS
            zf-C2H2   3 CpdCgksFsrksnLkrHirtH 23 
                        C dCg++Fsr +++  H+ t+
  Pp3c5_20980V3.3.p 181 CCDCGRVFSRVESFIEHQDTC 201
                        ******************987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576674.22E-57598No hitNo description
Gene3DG3DSA:3.30.160.603.9E-57598IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS5015710.977698IPR007087Zinc finger, C2H2
SMARTSM003550.00527698IPR015880Zinc finger, C2H2-like
PROSITE patternPS0002807898IPR007087Zinc finger, C2H2
SMARTSM0035583117147IPR015880Zinc finger, C2H2-like
SuperFamilySSF576674.22E-5148173No hitNo description
SMARTSM0035574153173IPR015880Zinc finger, C2H2-like
SMARTSM00355130179199IPR015880Zinc finger, C2H2-like
PROSITE profilePS501578.621179215IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009630Biological Processgravitropism
GO:0009965Biological Processleaf morphogenesis
GO:0010601Biological Processpositive regulation of auxin biosynthetic process
GO:0048444Biological Processfloral organ morphogenesis
GO:2000012Biological Processregulation of auxin polar transport
GO:2000904Biological Processregulation of starch metabolic process
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043621Molecular Functionprotein self-association
GO:0044212Molecular Functiontranscription regulatory region DNA binding
GO:0046872Molecular Functionmetal ion binding
GO:0046982Molecular Functionprotein heterodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 869 aa     Download sequence    Send to blast
MNALPSAGGG HGALHLLPEG CNVVSEFLPL TAGSVVNKRK RRPAGTPGML PQLVSRDPGA  60
EVVALSPKTL MESDRYVCEI CNQGFQRDQN LQMHRRRHKV PWKLLKRPSL GTLKRVYVCP  120
ERSCLHHDPS HALGDLVGIK KHYRRKHCTE KQWKCDKCSK GYAVQSDYKA HLKTCGTRGH  180
CCDCGRVFSR VESFIEHQDT CSAVKYKSMH SGDGSERKLS LQRQATDRNS NESPSQSSDT  240
TQAMSFAQSG MSDTAARSAD STKVIDHEHS RRIQESQAAY NAVLPGWLLD QRKELELLPW  300
KQRPPESVHP DVLTSGSTMQ GDRRVVQPSH GSRSQVTLCS SINSVHPEVS CMGSKAISPS  360
KCSEDVNAPS LALSIGLFGA EVGSSTPSPI VDMKPSFSSV EREVLALTYQ QRQGSAGIPK  420
IGTSSRSGAP LGNDLALSMF PTNLVQTRNQ VAIDSAATGT DAAVSLSDFL MQAARRLGPS  480
LTHSNAADYS ELKAQETSSR TEMVLNYNHG VGSTSSCHED RAGKAHESDL SGLRPVRRGA  540
LQHSQFEPAT SMVRSRQATI DHTDVTETHE IFTSAHSIDI NVSRSQKQMA AAGTRGDQAC  600
EQTWTDMSTA WSDPATARRT KHQTRQESEE AEKELARAEV LKREAREQLQ LASAEREYAD  660
RAREVAKRQI ELSEADLAKA KRIREHAQAE LEKAQFLKER VERSVGASAS SQDSSQFSFC  720
HSCKSAIEVN ASIRTPTSSP GSSSWSFVTP PTSNCEQLQV GPGKSGISSG QIFMVPGSHE  780
GGAKQADPSC KLLSGRMSWT DTISARLPVS SEEGRKHIWP VGTTSMSTFA TSMAVEEASQ  840
SEENLVAAAA GESSRSADQT NPKDFDLN*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3h_C9e-19150204458Zinc finger protein JACKDAW
5b3h_F9e-19150204458Zinc finger protein JACKDAW
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024376931.10.0uncharacterized protein LOC112282945 isoform X1
TrEMBLA0A2K1KKJ40.0A0A2K1KKJ4_PHYPA; Uncharacterized protein
STRINGPP1S218_34V6.10.0(Physcomitrella patens)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP9516242
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G01940.13e-94C2H2-like zinc finger protein