PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pp3c5_20980V3.2.p
Organism
Physcomitrella patens
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Bryophytina; Bryopsida; Funariidae; Funariales; Funariaceae; Physcomitrella
Family C2H2
Protein Properties Length: 794aa    MW: 86826.7 Da    PI: 8.1248
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pp3c5_20980V3.2.pgenomeCOSMOSSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H217.61e-05628123
                       EEETTTTEEESSHHHHHHHHHHT CS
            zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                       y+C++C++ F r  nL+ H r+H
  Pp3c5_20980V3.2.p  6 YVCEICNQGFQRDQNLQMHRRRH 28
                       9*********************9 PP
2zf-C2H214.40.0001183105123
                        EEETTTTEEESSHHHHHHHHHHT CS
            zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                        +kC +C+k +  +s++k H++t+
  Pp3c5_20980V3.2.p  83 WKCDKCSKGYAVQSDYKAHLKTC 105
                        58*******************98 PP
3zf-C2H212.20.00055111131323
                        ETTTTEEESSHHHHHHHHHHT CS
            zf-C2H2   3 CpdCgksFsrksnLkrHirtH 23 
                        C dCg++Fsr +++  H+ t+
  Pp3c5_20980V3.2.p 111 CCDCGRVFSRVESFIEHQDTC 131
                        ******************987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576673.24E-5528No hitNo description
Gene3DG3DSA:3.30.160.603.6E-5528IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS5015710.97628IPR007087Zinc finger, C2H2
SMARTSM003550.0052628IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280828IPR007087Zinc finger, C2H2
SMARTSM00355834777IPR015880Zinc finger, C2H2-like
SuperFamilySSF576673.24E-578103No hitNo description
SMARTSM003557483103IPR015880Zinc finger, C2H2-like
PROSITE profilePS501578.621109145IPR007087Zinc finger, C2H2
SMARTSM00355130109129IPR015880Zinc finger, C2H2-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009630Biological Processgravitropism
GO:0009965Biological Processleaf morphogenesis
GO:0010601Biological Processpositive regulation of auxin biosynthetic process
GO:0048444Biological Processfloral organ morphogenesis
GO:2000012Biological Processregulation of auxin polar transport
GO:2000904Biological Processregulation of starch metabolic process
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043621Molecular Functionprotein self-association
GO:0044212Molecular Functiontranscription regulatory region DNA binding
GO:0046872Molecular Functionmetal ion binding
GO:0046982Molecular Functionprotein heterodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 794 aa     Download sequence    Send to blast
MESDRYVCEI CNQGFQRDQN LQMHRRRHKV PWKLLKRPSL GTLKRVYVCP ERSCLHHDPS  60
HALGDLVGIK KHYRRKHCTE KQWKCDKCSK GYAVQSDYKA HLKTCGTRGH CCDCGRVFSR  120
VESFIEHQDT CSAVKYKSMH SGDGSERKLS LQRQATDRNS NESPSQSSDT TQAMSFAQSG  180
MSDTAARSAD STKVIDHEHS RRIQESQAAY NAVLPGWLLD QRKELELLPW KQRPPESVHP  240
DVLTSGSTMQ GDRRVVQPSH GSRSQVTLCS SINSVHPEVS CMGSKAISPS KCSEDVNAPS  300
LALSIGLFGA EVGSSTPSPI VDMKPSFSSV EREVLALTYQ QRQGSAGIPK IGTSSRSGAP  360
LGNDLALSMF PTNLVQTRNQ VAIDSAATGT DAAVSLSDFL MQAARRLGPS LTHSNAADYS  420
ELKAQETSSR TEMVLNYNHG VGSTSSCHED RAGKAHESDL SGLRPVRRGA LQHSQFEPAT  480
SMVRSRQATI DHTDVTETHE IFTSAHSIDI NVSRSQKQMA AAGTRGDQAC EQTWTDMSTA  540
WSDPATARRT KHQTRQESEE AEKELARAEV LKREAREQLQ LASAEREYAD RAREVAKRQI  600
ELSEADLAKA KRIREHAQAE LEKAQFLKER VERSVGASAS SQDSSQFSFC HSCKSAIEVN  660
ASIRTPTSSP GSSSWSFVTP PTSNCEQLQV GPGKSGISSG QIFMVPGSHE GGAKQADPSC  720
KLLSGRMSWT DTISARLPVS SEEGRKHIWP VGTTSMSTFA TSMAVEEASQ SEENLVAAAA  780
GSTWRRESIG AWG*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3h_C1e-1880134458Zinc finger protein JACKDAW
5b3h_F1e-1880134458Zinc finger protein JACKDAW
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024376933.10.0uncharacterized protein LOC112282945 isoform X3
TrEMBLA0A2K1KKJ40.0A0A2K1KKJ4_PHYPA; Uncharacterized protein
STRINGPP1S218_34V6.10.0(Physcomitrella patens)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G01940.11e-80C2H2-like zinc finger protein