PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Pp3c5_20330V3.6.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Bryophytina; Bryopsida; Funariidae; Funariales; Funariaceae; Physcomitrella
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Family | bZIP | ||||||||
Protein Properties | Length: 534aa MW: 58405.8 Da PI: 10.045 | ||||||||
Description | bZIP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | bZIP_1 | 32.2 | 2.3e-10 | 315 | 356 | 5 | 46 |
CHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 5 krerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLk 46 k+++r NR +A+rsR RK+++i eLe+ v +L++e +++ Pp3c5_20330V3.6.p 315 KKAKRILANRQSAQRSRVRKLQYISELERSVNALQTEVSTMS 356 899*********************************998886 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00338 | 1.6E-12 | 311 | 375 | IPR004827 | Basic-leucine zipper domain |
PROSITE profile | PS50217 | 9.128 | 313 | 359 | IPR004827 | Basic-leucine zipper domain |
SuperFamily | SSF57959 | 7.74E-11 | 315 | 369 | No hit | No description |
Gene3D | G3DSA:1.20.5.170 | 2.3E-11 | 315 | 381 | No hit | No description |
Pfam | PF00170 | 3.7E-9 | 315 | 360 | IPR004827 | Basic-leucine zipper domain |
CDD | cd14703 | 4.86E-23 | 316 | 367 | No hit | No description |
PROSITE pattern | PS00036 | 0 | 318 | 333 | IPR004827 | Basic-leucine zipper domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 534 aa Download sequence Send to blast |
MSSGKGDARQ VNWSHPMSSS SQLPPKSPGA YSMFGSGSSL FESDLLASLP LRGGSHHKRT 60 PSAGYLPNVV PLWLEDILES PDGEVVVRKG SHRRSSSDSV AFLDSPQDLT NFVANVTEEE 120 EFVLRDPPPP IARPSHRRGV SADLKSSQYD VPGPQRPSHR RGMSADYNNN RLDKEQLMSV 180 LSELEPFQTQ QPRQRPEKHI PRGVGPPGMV RPGSSNDSWN PEKGKKHVTL PVSNSTSDSV 240 SHERGRNQKS NVTTSENRST GSDSNSHSDE SHDELQSGHL GREKFEQEAQ SKREGDGSRQ 300 AQGDGTEVDP SLDPKKAKRI LANRQSAQRS RVRKLQYISE LERSVNALQT EVSTMSPQVG 360 FYDHRRALLT AENVLLKQKL AALSQSQRYK EAQNESLKKE VQRLLQIFNQ QNQSQQQIQV 420 VQHRPLSPNA FEISQQQLSK LDLGPNIPKP KSPDLYSSGV NGKNSSGLSS SLFAGGVVSP 480 QMRSGSNVVR PPSHPAKVGV NTSCMAPSSG KNLEGRMMGG SGTLPSDFMV HNS* |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_024376312.1 | 0.0 | uncharacterized protein LOC112282640 | ||||
Refseq | XP_024376313.1 | 0.0 | uncharacterized protein LOC112282640 | ||||
Refseq | XP_024376314.1 | 0.0 | uncharacterized protein LOC112282640 | ||||
Refseq | XP_024376315.1 | 0.0 | uncharacterized protein LOC112282640 | ||||
TrEMBL | A0A2K1KKF4 | 0.0 | A0A2K1KKF4_PHYPA; Uncharacterized protein | ||||
STRING | PP1S93_157V6.1 | 0.0 | (Physcomitrella patens) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G42380.2 | 2e-36 | bZIP family protein |
Link Out ? help Back to Top | |
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Phytozome | Pp3c5_20330V3.6.p |