PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pp3c5_1710V3.2.p
Organism
Physcomitrella patens
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Bryophytina; Bryopsida; Funariidae; Funariales; Funariaceae; Physcomitrella
Family GRAS
Protein Properties Length: 766aa    MW: 86635.6 Da    PI: 6.6519
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pp3c5_1710V3.2.pgenomeCOSMOSSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS258.62.2e-793607472374
              GRAS   2 velLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalkl...fsevsPil 91 
                       ++lL  cA a++s++ ++ q+l++ l++las  gd++qR aay ++AL  r+++ ++     l+p++ ++++s    +++++   f+e  P++
  Pp3c5_1710V3.2.p 360 EQLLNLCAAAIASKNISRMQHLMWVLNDLASVVGDANQRYAAYGLRALFCRITGRMEAAKTYLRPRHYDQEQSYGPKMVHRAlvkFHEHVPWH 452
                       689999************************************************9999999999999999997777777777778******** PP

              GRAS  92 kfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegpp.slRiTgvgspesg.......skeeleetgerLakfAeelgvpf 176
                       + ++ +a q++le  +g++r+HiiD+++++G+ Wp +++aL sR++gpp  lR+T + + + +          e      rL kfA+ lg+++
  Pp3c5_1710V3.2.p 453 QNCYSVASQTLLEVCAGKSRLHIIDIGAGKGIEWPIFIDALVSRSGGPPsILRMTMIRDLQREepnlrtrGGSEAADFMTRLVKFASLLGLHV 545
                       *********************************************9999689*******998889998887888889999************* PP

              GRAS 177 efnvlvakrledleleeLrvkpgEalaVnlvlqlhrll.....desvsles.....erdevLklvkslsPkvvvvveqeadhnsesFlerfle 259
                       e n+ v k le+++ e+L+++ gE laV ++++lhrl      ++     s     +rd++L+++ +l P++++ +++++dh s++Fl+rf +
  Pp3c5_1710V3.2.p 546 EVNM-VRKPLECVTREDLKLRDGEILAVVCQFRLHRLSeeldyQS-----SppdlsPRDKFLDFLFTLDPHIFIQSDNDSDHCSQDFLTRFQN 632
                       ***9.7*******************************93333333.....2444559************************************ PP

              GRAS 260 aleyysalfdsleaklpres.eerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvk.sdgyr 350
                       a+++ + +f+s+++++   + +er+ +E e  +  + n+vaceg +r+er+e++ +W +r+++aGF p +lse++ k  + l+++++ ++  +
  Pp3c5_1710V3.2.p 633 AVSFWWRCFESIDVGYNGRDpDERQIIEYE-GAMMLLNMVACEGIARIERNESYPQWARRIKRAGFMPRELSEETKKVSQNLVANHSeFW--E 722
                       ************999877776999999999.88899***************************************************444..4 PP

              GRAS 351 ve.eesgslvlgWkdrpLvsvSaWr 374
                           es+ + l W+++p +++S+W+
  Pp3c5_1710V3.2.p 723 TAfIESNMVSLLWRKQPTTFTSVWK 747
                       4414566666**************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098540.332333727IPR005202Transcription factor GRAS
PfamPF035147.5E-77360747IPR005202Transcription factor GRAS
Sequence ? help Back to Top
Protein Sequence    Length: 766 aa     Download sequence    Send to blast
MRGSPQTSQD SQTPLILDPG MSSVSSGSQV LQPPTGNVHY NASYGRTSQS KYAVQPSSNF  60
QGHLHPAQQF SAPPMHRHKA PEMHTPFSQE FYNVQDEIDM QSYEDIWRNL ESDFLAQTSA  120
QYDATPGDIN MVDAVYNVSQ STPGIPFPVP NQTQPVSRPI ADQKTWNMLS NSVQNEAESS  180
SNVRTRYGNA SSSTRHPFGF NPPRHFAEQA QPHQRSEVAQ NRDLSFHQSV METRPDFMDM  240
VMDDSVSDGI SITGSSDNQL RHAQSPNYGF GSHGYAGTAS NFGERQHSAV QQSFQPENNS  300
REQMQTNHQY NRFPEHREAS FSSGGDLYNE TKSGVESDFS TLMAPGQSGL RSLGESRWAE  360
QLLNLCAAAI ASKNISRMQH LMWVLNDLAS VVGDANQRYA AYGLRALFCR ITGRMEAAKT  420
YLRPRHYDQE QSYGPKMVHR ALVKFHEHVP WHQNCYSVAS QTLLEVCAGK SRLHIIDIGA  480
GKGIEWPIFI DALVSRSGGP PSILRMTMIR DLQREEPNLR TRGGSEAADF MTRLVKFASL  540
LGLHVEVNMV RKPLECVTRE DLKLRDGEIL AVVCQFRLHR LSEELDYQSS PPDLSPRDKF  600
LDFLFTLDPH IFIQSDNDSD HCSQDFLTRF QNAVSFWWRC FESIDVGYNG RDPDERQIIE  660
YEGAMMLLNM VACEGIARIE RNESYPQWAR RIKRAGFMPR ELSEETKKVS QNLVANHSEF  720
WETAFIESNM VSLLWRKQPT TFTSVWKSSS CTNPKHSCKC SKLHN*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3g_B3e-4035674784473Protein SHORT-ROOT
5b3h_B2e-4035674730419Protein SHORT-ROOT
5b3h_E2e-4035674730419Protein SHORT-ROOT
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Ppa.36260.0protonema| sporophyte
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024375362.10.0nodulation-signaling pathway 1 protein-like isoform X2
TrEMBLA0A2K1KI230.0A0A2K1KI23_PHYPA; Uncharacterized protein
STRINGPP1S72_74V6.10.0(Physcomitrella patens)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G13840.19e-52GRAS family protein