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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Pp3c5_12180V3.2.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Bryophytina; Bryopsida; Funariidae; Funariales; Funariaceae; Physcomitrella
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Family | CO-like | ||||||||
Protein Properties | Length: 562aa MW: 60566.4 Da PI: 5.8441 | ||||||||
Description | CO-like family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-B_box | 22.2 | 3e-07 | 2 | 44 | 3 | 39 |
zf-B_box 3 erkCpeHeekelqlfCedCqqllCedClleeHkg......Htv 39 e++C+ ++e +++ +C+ ++ llC +C ++ H+ H++ Pp3c5_12180V3.2.p 2 ETTCDFCGEGQATVYCRADSALLCLSCDQHVHSAnalsqrHSR 44 689******77*********************65677777765 PP | |||||||
2 | zf-B_box | 17.4 | 9.4e-06 | 46 | 85 | 4 | 37 |
zf-B_box 4 rkCpeHeekelqlfCedCqqllCedClleeHkg......H 37 C ++ ++ C++Cq ++C++C +++H+ H Pp3c5_12180V3.2.p 46 LLCHGCNMRPAGVRCTTCQNCFCQTCDDNTHSPsmmsaqH 85 57****************************9435666665 PP | |||||||
3 | CCT | 58.9 | 1.7e-20 | 504 | 547 | 1 | 44 |
CCT 1 ReaallRYkeKrktRkFeKkirYesRKavAesRpRvKGrFvkqa 44 R+ a+lRYkeKrk R+F+K++rYesRKa+A+ R+RvKGrFvk+ Pp3c5_12180V3.2.p 504 RDSAMLRYKEKRKIRRFDKRVRYESRKARADIRKRVKGRFVKAG 547 899**************************************986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00336 | 8.1E-11 | 1 | 47 | IPR000315 | B-box-type zinc finger |
PROSITE profile | PS50119 | 10.125 | 1 | 47 | IPR000315 | B-box-type zinc finger |
Pfam | PF00643 | 1.4E-5 | 2 | 44 | IPR000315 | B-box-type zinc finger |
CDD | cd00021 | 9.53E-9 | 5 | 47 | No hit | No description |
PROSITE profile | PS50119 | 8.802 | 43 | 90 | IPR000315 | B-box-type zinc finger |
PROSITE profile | PS51017 | 15.269 | 504 | 546 | IPR010402 | CCT domain |
Pfam | PF06203 | 4.8E-15 | 504 | 546 | IPR010402 | CCT domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0005622 | Cellular Component | intracellular | ||||
GO:0005515 | Molecular Function | protein binding | ||||
GO:0008270 | Molecular Function | zinc ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 562 aa Download sequence Send to blast |
METTCDFCGE GQATVYCRAD SALLCLSCDQ HVHSANALSQ RHSRTLLCHG CNMRPAGVRC 60 TTCQNCFCQT CDDNTHSPSM MSAQHQRHVL ECFTGCPSAS ELAALWACDN CSDVGGPISS 120 VFSRGLNSKW AEIAGSSATR STVARENQMG GAQRMDSSSG VAAVGVTNIS SAAPPLLAKS 180 AVLPSTSAVA RQQEQGCIEK EISQQLQVLQ VQDLARTSSA SLPVQQAKRQ CVNTQTSSQT 240 QQESEQCSPM PVRRHSDQQP AQNSGVSGGE SSMGVDDGQM MKLEDGPNDL VNQGGPDPFW 300 RSNALTQATQ MWGQNMQDLG VCGEVSDPCD AFSMADVDLF FDNYEDMFSS GSGPSRSSFE 360 EISPRCSSIG QDSANASNDH ARMQSIPEAE LFKPINQDAA TTANDIKLRE NMVRQAGPGP 420 GPVPPELHEM AVLMAMNDMD RTPCNMGSQF PAGPALTSRS LTLPGRSGDS GDYQDCNLSP 480 LFFSSGEASL GSRSPDSVSI AQARDSAMLR YKEKRKIRRF DKRVRYESRK ARADIRKRVK 540 GRFVKAGQAY DYDPLATTRS F* |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Ppa.12012 | 0.0 | gametophore| protonema |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_024375952.1 | 0.0 | zinc finger protein CONSTANS-LIKE 9-like | ||||
Refseq | XP_024375954.1 | 0.0 | zinc finger protein CONSTANS-LIKE 9-like | ||||
Refseq | XP_024375955.1 | 0.0 | zinc finger protein CONSTANS-LIKE 9-like | ||||
Refseq | XP_024375956.1 | 0.0 | zinc finger protein CONSTANS-LIKE 9-like | ||||
TrEMBL | A0A2K1KJD2 | 0.0 | A0A2K1KJD2_PHYPA; Uncharacterized protein | ||||
STRING | PP1S236_21V6.1 | 0.0 | (Physcomitrella patens) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G48250.1 | 5e-29 | B-box type zinc finger protein with CCT domain |
Link Out ? help Back to Top | |
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Phytozome | Pp3c5_12180V3.2.p |