PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pp3c5_1140V3.1.p
Organism
Physcomitrella patens
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Bryophytina; Bryopsida; Funariidae; Funariales; Funariaceae; Physcomitrella
Family bHLH
Protein Properties Length: 425aa    MW: 47371.1 Da    PI: 5.7189
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pp3c5_1140V3.1.pgenomeCOSMOSSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH31.43.4e-10214256754
                       HHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
               HLH   7 erErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                       + Er+RR+++ +++  Lr l+Pk      +K++K++iL  A+e++++L
  Pp3c5_1140V3.1.p 214 ISERKRREKLQKSLLDLRALVPKI-----TKMDKVSILSDAIEHVQDL 256
                       67*********************7.....7****************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088813.706207256IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474595.5E-14212267IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003535.6E-12213262IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.39E-11214261No hitNo description
PfamPF000108.9E-8214256IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.2E-13214265IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0016021Cellular Componentintegral component of membrane
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 425 aa     Download sequence    Send to blast
MCNLRFSLFH CRLEANKVVF SEPKSLVRTY CQEAREADKV PPTVSINWKE NTDPDFHTSY  60
MAHNPRKLDM WNSYQVTGSA KSEEFDKCNG MPRTLSAGLQ AAWEQLERTG LHDPLSVVHY  120
ERLDAIGTGT ASRHDSGQVG EIQSGYNGIY FDEIPEALPS HHSDFTSINR NPSVTASQLN  180
GASPDLDTEM NSEPEKKRGR RKFPEGWVAS KNLISERKRR EKLQKSLLDL RALVPKITKM  240
DKVSILSDAI EHVQDLKQKV EMLENLSTTV EDGSIDQATA ECSKSSGSNL EVSEADDEGH  300
NQYHASEDAS CSARCDYQSN SSSQDWAMHQ VSHTFLAQLD VTKLEHGLYK LNFTCKQQPG  360
VLVQLSQAIE AFVIEIVHTN IVVITPTKVT CSFVVKMSSW NVMAVTDVEA DIKQLLGQSG  420
LLFS*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1199219RRKFPEGWVASKNLISERKRR
2215220ERKRRE
3216221RKRREK
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024375131.10.0transcription factor NAI1-like isoform X1
RefseqXP_024375132.10.0transcription factor NAI1-like isoform X1
RefseqXP_024375133.10.0transcription factor NAI1-like isoform X1
TrEMBLA0A2K1KHZ50.0A0A2K1KHZ5_PHYPA; Uncharacterized protein
STRINGPP1S72_3V6.10.0(Physcomitrella patens)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP5571678
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G16910.12e-14bHLH family protein