PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pp3c4_9600V3.2.p

Organism

Physcomitrella patens

Taxonomic ID

3218

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Bryophytina; Bryopsida; Funariidae; Funariales; Funariaceae; Physcomitrella

Family

LBD

Protein Properties

Length: 421aa MW: 45235.6 Da PI: 8.1777

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pp3c4_9600V3.2.p	genome	COSMOSS	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	126.3	1.5e-39	191	292	1	101
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeq.pkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlka 92 +C aCk+lrrkC+++C++apyf aeq ++kfa+vhk+FGasnv kll ++p+ +r+da+ ++ yeA+ar++dPvyG+v++i++lqqq+++l+a Pp3c4_9600V3.2.p 191 PCGACKFLRRKCVRGCIFAPYFSAEQgASKFAAVHKVFGASNVAKLLVHIPTPHRSDAVLTISYEAQARLSDPVYGCVATIFALQQQVSSLQA 283 7***********************89************************************************************* PP DUF260 93 elallkeel 101 ela+++++l Pp3c4_9600V3.2.p 284 ELAMVQAQL 292 ***9985 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50891	23.575	190	292	IPR004883	Lateral organ boundaries, LOB
Pfam	PF03195	1.5E-38	191	289	IPR004883	Lateral organ boundaries, LOB

Sequence ? help Back to Top
Protein Sequence Length: 421 aa Download sequence Send to blast
MRVGCLIIAT FSGFTCFEKH IVSRLASPGS TTLRKLVGGE RVTSAVTGWG LGTNVDLEDR 60 RKRHPEGSDE LLLSGQDLEI WNPEAIRGAL ESWSGKDKDQ LDNWGHQLAE RNNPSGSKTQ 120 NLDTSGKEPG ATDSTSAGCT EQECGGALDN ATRTSSPVTT ARTGGGTNPN HSARRKGAGV 180 GYSSSMNNGA PCGACKFLRR KCVRGCIFAP YFSAEQGASK FAAVHKVFGA SNVAKLLVHI 240 PTPHRSDAVL TISYEAQARL SDPVYGCVAT IFALQQQVSS LQAELAMVQA QLADRQAHLQ 300 QTHHQQRIVF NQPPPEYMQQ HHLVDQAHVS SSPGLSMGMP GRSSAADTYS NSRVKEEVGY 360 RLQGMQQAAH HYFGMPSSSM EPTSAAQSLL SSLQKTRSVS MEDQPDEGEL QALASLLRRK 420 *

Sequence ? help Back to Top

Protein Sequence Length: 421 aa Download sequence Send to blast

MRVGCLIIAT FSGFTCFEKH IVSRLASPGS TTLRKLVGGE RVTSAVTGWG LGTNVDLEDR  60
RKRHPEGSDE LLLSGQDLEI WNPEAIRGAL ESWSGKDKDQ LDNWGHQLAE RNNPSGSKTQ  120
NLDTSGKEPG ATDSTSAGCT EQECGGALDN ATRTSSPVTT ARTGGGTNPN HSARRKGAGV  180
GYSSSMNNGA PCGACKFLRR KCVRGCIFAP YFSAEQGASK FAAVHKVFGA SNVAKLLVHI  240
PTPHRSDAVL TISYEAQARL SDPVYGCVAT IFALQQQVSS LQAELAMVQA QLADRQAHLQ  300
QTHHQQRIVF NQPPPEYMQQ HHLVDQAHVS SSPGLSMGMP GRSSAADTYS NSRVKEEVGY  360
RLQGMQQAAH HYFGMPSSSM EPTSAAQSLL SSLQKTRSVS MEDQPDEGEL QALASLLRRK  420
*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5ly0_A	1e-36	189	292	9	111	LOB family transfactor Ramosa2.1
5ly0_B	1e-36	189	292	9	111	LOB family transfactor Ramosa2.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_024373978.1	0.0	uncharacterized protein LOC112281556
TrEMBL	A0A2K1KMU8	0.0	A0A2K1KMU8_PHYPA; Uncharacterized protein
STRING	PP1S190_23V6.1	0.0	(Physcomitrella patens)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G03760.1	3e-55	LOB domain-containing protein 20

Link Out ? help Back to Top
Phytozome	Pp3c4_9600V3.2.p