PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Pp3c4_9600V3.2.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Bryophytina; Bryopsida; Funariidae; Funariales; Funariaceae; Physcomitrella
|
||||||||
Family | LBD | ||||||||
Protein Properties | Length: 421aa MW: 45235.6 Da PI: 8.1777 | ||||||||
Description | LBD family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF260 | 126.3 | 1.5e-39 | 191 | 292 | 1 | 101 |
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeq.pkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlka 92 +C aCk+lrrkC+++C++apyf aeq ++kfa+vhk+FGasnv kll ++p+ +r+da+ ++ yeA+ar++dPvyG+v++i++lqqq+++l+a Pp3c4_9600V3.2.p 191 PCGACKFLRRKCVRGCIFAPYFSAEQgASKFAAVHKVFGASNVAKLLVHIPTPHRSDAVLTISYEAQARLSDPVYGCVATIFALQQQVSSLQA 283 7*************************89***************************************************************** PP DUF260 93 elallkeel 101 ela+++++l Pp3c4_9600V3.2.p 284 ELAMVQAQL 292 *****9985 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50891 | 23.575 | 190 | 292 | IPR004883 | Lateral organ boundaries, LOB |
Pfam | PF03195 | 1.5E-38 | 191 | 289 | IPR004883 | Lateral organ boundaries, LOB |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 421 aa Download sequence Send to blast |
MRVGCLIIAT FSGFTCFEKH IVSRLASPGS TTLRKLVGGE RVTSAVTGWG LGTNVDLEDR 60 RKRHPEGSDE LLLSGQDLEI WNPEAIRGAL ESWSGKDKDQ LDNWGHQLAE RNNPSGSKTQ 120 NLDTSGKEPG ATDSTSAGCT EQECGGALDN ATRTSSPVTT ARTGGGTNPN HSARRKGAGV 180 GYSSSMNNGA PCGACKFLRR KCVRGCIFAP YFSAEQGASK FAAVHKVFGA SNVAKLLVHI 240 PTPHRSDAVL TISYEAQARL SDPVYGCVAT IFALQQQVSS LQAELAMVQA QLADRQAHLQ 300 QTHHQQRIVF NQPPPEYMQQ HHLVDQAHVS SSPGLSMGMP GRSSAADTYS NSRVKEEVGY 360 RLQGMQQAAH HYFGMPSSSM EPTSAAQSLL SSLQKTRSVS MEDQPDEGEL QALASLLRRK 420 * |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5ly0_A | 1e-36 | 189 | 292 | 9 | 111 | LOB family transfactor Ramosa2.1 |
5ly0_B | 1e-36 | 189 | 292 | 9 | 111 | LOB family transfactor Ramosa2.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_024373978.1 | 0.0 | uncharacterized protein LOC112281556 | ||||
TrEMBL | A0A2K1KMU8 | 0.0 | A0A2K1KMU8_PHYPA; Uncharacterized protein | ||||
STRING | PP1S190_23V6.1 | 0.0 | (Physcomitrella patens) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT3G03760.1 | 3e-55 | LOB domain-containing protein 20 |
Link Out ? help Back to Top | |
---|---|
Phytozome | Pp3c4_9600V3.2.p |