PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Pp3c4_850V3.2.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Bryophytina; Bryopsida; Funariidae; Funariales; Funariaceae; Physcomitrella
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Family | Dof | ||||||||
Protein Properties | Length: 384aa MW: 41392.1 Da PI: 7.6324 | ||||||||
Description | Dof family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-Dof | 120.5 | 6.2e-38 | 45 | 104 | 2 | 61 |
zf-Dof 2 kekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkks 61 ++k l+cprC+s+ntkfCyynnys++qPr+fC++C+ryWt GG+lrnvPvGgg+rk++++ Pp3c4_850V3.2.p 45 PQKVLPCPRCESMNTKFCYYNNYSVNQPRHFCRQCQRYWTVGGTLRNVPVGGGSRKKHRH 104 78999***************************************************9876 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
ProDom | PD007478 | 2.0E-25 | 32 | 100 | IPR003851 | Zinc finger, Dof-type |
Pfam | PF02701 | 2.4E-32 | 47 | 103 | IPR003851 | Zinc finger, Dof-type |
PROSITE profile | PS50884 | 28.453 | 49 | 103 | IPR003851 | Zinc finger, Dof-type |
PROSITE pattern | PS01361 | 0 | 51 | 87 | IPR003851 | Zinc finger, Dof-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 384 aa Download sequence Send to blast |
MVLLTASKDG TTEGSLEKKA RKLALDGTTI PLTPDSPGKK ALEKPQKVLP CPRCESMNTK 60 FCYYNNYSVN QPRHFCRQCQ RYWTVGGTLR NVPVGGGSRK KHRHQRQEPY MRTAPGSVTS 120 PLALATAGGQ PGMANMGFQQ LLTHDMSGFN FSQLPGFVPQ TLYPAYPVDQ SQGMYAQPLS 180 NKSTQHEFQS MHPACGVMNP QSLPTATGHY CGTDVGAQLQ GDNGVNTNGA AGPVKHEFWS 240 NMMPQNPHLQ AGNHSVQSLW EECKVTSGTV PTTTADSDAR KAGALVDLQA VAKSGGYDSS 300 MLLHLGLNTR PQVSGKPSFS NHNQLDSRGV AHPTNGSSPP HGSSTIEEEG STPTNGYSNN 360 GYEEGDTVSS MWQDMHDIHD IFQ* |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Ppa.6803 | 0.0 | gametophore| protonema |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_024373861.1 | 0.0 | uncharacterized protein LOC112281500 | ||||
Refseq | XP_024373862.1 | 0.0 | uncharacterized protein LOC112281500 | ||||
Refseq | XP_024373864.1 | 0.0 | uncharacterized protein LOC112281500 | ||||
Refseq | XP_024373865.1 | 0.0 | uncharacterized protein LOC112281500 | ||||
TrEMBL | A0A2K1KLP5 | 0.0 | A0A2K1KLP5_PHYPA; Uncharacterized protein | ||||
STRING | PP1S267_24V6.1 | 0.0 | (Physcomitrella patens) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G62430.1 | 2e-32 | cycling DOF factor 1 |
Link Out ? help Back to Top | |
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Phytozome | Pp3c4_850V3.2.p |