PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pp3c4_850V3.1.p

Organism

Physcomitrella patens

Taxonomic ID

3218

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Bryophytina; Bryopsida; Funariidae; Funariales; Funariaceae; Physcomitrella

Family

Dof

Protein Properties

Length: 384aa MW: 41392.1 Da PI: 7.6324

Description

Dof family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pp3c4_850V3.1.p	genome	COSMOSS	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-Dof	120.5	6.2e-38	45	104	2	61
zf-Dof 2 kekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkks 61 ++k l+cprC+s+ntkfCyynnys++qPr+fC++C+ryWt GG+lrnvPvGgg+rk++++ Pp3c4_850V3.1.p 45 PQKVLPCPRCESMNTKFCYYNNYSVNQPRHFCRQCQRYWTVGGTLRNVPVGGGSRKKHRH 104 78999***************************************************9876 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
ProDom	PD007478	2.0E-25	32	100	IPR003851	Zinc finger, Dof-type
Pfam	PF02701	2.4E-32	47	103	IPR003851	Zinc finger, Dof-type
PROSITE profile	PS50884	28.453	49	103	IPR003851	Zinc finger, Dof-type
PROSITE pattern	PS01361	0	51	87	IPR003851	Zinc finger, Dof-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 384 aa Download sequence Send to blast
MVLLTASKDG TTEGSLEKKA RKLALDGTTI PLTPDSPGKK ALEKPQKVLP CPRCESMNTK 60 FCYYNNYSVN QPRHFCRQCQ RYWTVGGTLR NVPVGGGSRK KHRHQRQEPY MRTAPGSVTS 120 PLALATAGGQ PGMANMGFQQ LLTHDMSGFN FSQLPGFVPQ TLYPAYPVDQ SQGMYAQPLS 180 NKSTQHEFQS MHPACGVMNP QSLPTATGHY CGTDVGAQLQ GDNGVNTNGA AGPVKHEFWS 240 NMMPQNPHLQ AGNHSVQSLW EECKVTSGTV PTTTADSDAR KAGALVDLQA VAKSGGYDSS 300 MLLHLGLNTR PQVSGKPSFS NHNQLDSRGV AHPTNGSSPP HGSSTIEEEG STPTNGYSNN 360 GYEEGDTVSS MWQDMHDIHD IFQ*

Sequence ? help Back to Top

Protein Sequence Length: 384 aa Download sequence Send to blast

MVLLTASKDG TTEGSLEKKA RKLALDGTTI PLTPDSPGKK ALEKPQKVLP CPRCESMNTK  60
FCYYNNYSVN QPRHFCRQCQ RYWTVGGTLR NVPVGGGSRK KHRHQRQEPY MRTAPGSVTS  120
PLALATAGGQ PGMANMGFQQ LLTHDMSGFN FSQLPGFVPQ TLYPAYPVDQ SQGMYAQPLS  180
NKSTQHEFQS MHPACGVMNP QSLPTATGHY CGTDVGAQLQ GDNGVNTNGA AGPVKHEFWS  240
NMMPQNPHLQ AGNHSVQSLW EECKVTSGTV PTTTADSDAR KAGALVDLQA VAKSGGYDSS  300
MLLHLGLNTR PQVSGKPSFS NHNQLDSRGV AHPTNGSSPP HGSSTIEEEG STPTNGYSNN  360
GYEEGDTVSS MWQDMHDIHD IFQ*

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Ppa.6803	0.0	gametophore\| protonema

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_024373861.1	0.0	uncharacterized protein LOC112281500
Refseq	XP_024373862.1	0.0	uncharacterized protein LOC112281500
Refseq	XP_024373864.1	0.0	uncharacterized protein LOC112281500
Refseq	XP_024373865.1	0.0	uncharacterized protein LOC112281500
TrEMBL	A0A2K1KLP5	0.0	A0A2K1KLP5_PHYPA; Uncharacterized protein
STRING	PP1S267_24V6.1	0.0	(Physcomitrella patens)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Representative plant	OGRP38	17	445

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G62430.1	2e-32	cycling DOF factor 1

Link Out ? help Back to Top
Phytozome	Pp3c4_850V3.1.p