PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Pp3c4_7328V3.1.p | ||||||||
Common Name | PpABI3C | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Bryophytina; Bryopsida; Funariidae; Funariales; Funariaceae; Physcomitrella
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Family | B3 | ||||||||
Protein Properties | Length: 540aa MW: 59242 Da PI: 7.0008 | ||||||||
Description | B3 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 52.5 | 9.1e-17 | 332 | 422 | 2 | 90 |
EEE-..-HHHHTT-EE--HHH.HTT..---..--SEEEEEE.TTS-EEEEEE....EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSE CS B3 2 fkvltpsdvlksgrlvlpkkfaeeh..ggkkeesktltled.esgrsWevkliy..rkksgryvltkGWkeFvkangLkegDfvvFkldgrse 89 +k+l psdv+++gr++lpkk ae+h ++ ++++ +++ed sg W++++++ ++ks++y+l+ ++ +Fvk+++L egD +++++++ + Pp3c4_7328V3.1.p 332 QKELRPSDVGSLGRIILPKKEAEQHmpFLSMRGGVCIQVEDfDSGHIWNLRYRFwpNNKSRMYLLE-NTGDFVKSHRLVEGDLLIIYRSQ--Q 421 7999***********************677778899*****9999*******99777777777777.********************544..4 PP E CS B3 90 f 90 + Pp3c4_7328V3.1.p 422 G 422 4 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.40.330.10 | 2.8E-29 | 319 | 431 | IPR015300 | DNA-binding pseudobarrel domain |
SuperFamily | SSF101936 | 4.05E-21 | 329 | 426 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 4.48E-23 | 329 | 422 | No hit | No description |
PROSITE profile | PS50863 | 9.784 | 331 | 432 | IPR003340 | B3 DNA binding domain |
SMART | SM01019 | 1.6E-14 | 331 | 432 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 4.2E-13 | 332 | 421 | IPR003340 | B3 DNA binding domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 540 aa Download sequence Send to blast |
MVNQGSGDFS SQDGSLPSCS STSSERNQSS GSGLGEGCSL LMDDEVRAML KKVTVNEAVL 60 NRAIQSLGGG EKGLKSLMGY IMIWVKQQKE CKSARSNSGE QSSGSPFNFS MLGAEAAAEA 120 EAIVLQHTSD AFQSLNGILQ PSATQSPVNL PDTQHQQRFK SRRLMMEDAE VDAGLKVDAG 180 FCPSNFMAVG VPPGDYSMYM PAMAGPAVSP YMPRLNYDSG MQQPVCNMQS MIPSTTSQNS 240 MQPIEQTPAM ATKAARRNRM ARQRQSMMKQ HARATNQANP VSVGFWVWNG APPAGGTKKT 300 EISHSGAQPA QGTAVNAEQK GRNMDSLTFL LQKELRPSDV GSLGRIILPK KEAEQHMPFL 360 SMRGGVCIQV EDFDSGHIWN LRYRFWPNNK SRMYLLENTG DFVKSHRLVE GDLLIIYRSQ 420 QGDYVMRGKK RKTQRLETES VKIQFAHSSA RDSNEEHTSP KGNGLPMERL YGGGPPEKFV 480 KEEPPNLDDD PFLKDMMMSM GPSFGSDATS LQPLERFPSL NLDFPLDEIM AVNPKTELE* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
6j9b_A | 2e-33 | 327 | 430 | 1 | 105 | B3 domain-containing transcription factor FUS3 |
6j9b_D | 2e-33 | 327 | 430 | 1 | 105 | B3 domain-containing transcription factor FUS3 |
Search in ModeBase |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AB245516 | 0.0 | AB245516.1 Physcomitrella patens PpABI3C mRNA for transcription factor ABI3-like, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_024373954.1 | 0.0 | B3 domain-containing transcription factor ABI3-like isoform X2 | ||||
TrEMBL | Q2ABG4 | 0.0 | Q2ABG4_PHYPA; Transcription factor ABI3-like | ||||
STRING | PP1S143_82V6.1 | 0.0 | (Physcomitrella patens) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Representative plant | OGRP788 | 17 | 66 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G24650.1 | 3e-39 | B3 family protein |
Link Out ? help Back to Top | |
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Phytozome | Pp3c4_7328V3.1.p |