PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pp3c4_7328V3.1.p
Common NamePpABI3C
Organism
Physcomitrella patens
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Bryophytina; Bryopsida; Funariidae; Funariales; Funariaceae; Physcomitrella
Family B3
Protein Properties Length: 540aa    MW: 59242 Da    PI: 7.0008
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pp3c4_7328V3.1.pgenomeCOSMOSSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B352.59.1e-17332422290
                       EEE-..-HHHHTT-EE--HHH.HTT..---..--SEEEEEE.TTS-EEEEEE....EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSE CS
                B3   2 fkvltpsdvlksgrlvlpkkfaeeh..ggkkeesktltled.esgrsWevkliy..rkksgryvltkGWkeFvkangLkegDfvvFkldgrse 89 
                       +k+l psdv+++gr++lpkk ae+h   ++ ++++ +++ed  sg  W++++++  ++ks++y+l+ ++ +Fvk+++L egD +++++++  +
  Pp3c4_7328V3.1.p 332 QKELRPSDVGSLGRIILPKKEAEQHmpFLSMRGGVCIQVEDfDSGHIWNLRYRFwpNNKSRMYLLE-NTGDFVKSHRLVEGDLLIIYRSQ--Q 421
                       7999***********************677778899*****9999*******99777777777777.********************544..4 PP

                       E CS
                B3  90 f 90 
                       +
  Pp3c4_7328V3.1.p 422 G 422
                       4 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.102.8E-29319431IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019364.05E-21329426IPR015300DNA-binding pseudobarrel domain
CDDcd100174.48E-23329422No hitNo description
PROSITE profilePS508639.784331432IPR003340B3 DNA binding domain
SMARTSM010191.6E-14331432IPR003340B3 DNA binding domain
PfamPF023624.2E-13332421IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 540 aa     Download sequence    Send to blast
MVNQGSGDFS SQDGSLPSCS STSSERNQSS GSGLGEGCSL LMDDEVRAML KKVTVNEAVL  60
NRAIQSLGGG EKGLKSLMGY IMIWVKQQKE CKSARSNSGE QSSGSPFNFS MLGAEAAAEA  120
EAIVLQHTSD AFQSLNGILQ PSATQSPVNL PDTQHQQRFK SRRLMMEDAE VDAGLKVDAG  180
FCPSNFMAVG VPPGDYSMYM PAMAGPAVSP YMPRLNYDSG MQQPVCNMQS MIPSTTSQNS  240
MQPIEQTPAM ATKAARRNRM ARQRQSMMKQ HARATNQANP VSVGFWVWNG APPAGGTKKT  300
EISHSGAQPA QGTAVNAEQK GRNMDSLTFL LQKELRPSDV GSLGRIILPK KEAEQHMPFL  360
SMRGGVCIQV EDFDSGHIWN LRYRFWPNNK SRMYLLENTG DFVKSHRLVE GDLLIIYRSQ  420
QGDYVMRGKK RKTQRLETES VKIQFAHSSA RDSNEEHTSP KGNGLPMERL YGGGPPEKFV  480
KEEPPNLDDD PFLKDMMMSM GPSFGSDATS LQPLERFPSL NLDFPLDEIM AVNPKTELE*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6j9b_A2e-333274301105B3 domain-containing transcription factor FUS3
6j9b_D2e-333274301105B3 domain-containing transcription factor FUS3
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAB2455160.0AB245516.1 Physcomitrella patens PpABI3C mRNA for transcription factor ABI3-like, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024373954.10.0B3 domain-containing transcription factor ABI3-like isoform X2
TrEMBLQ2ABG40.0Q2ABG4_PHYPA; Transcription factor ABI3-like
STRINGPP1S143_82V6.10.0(Physcomitrella patens)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP7881766
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G24650.13e-39B3 family protein