PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Protein Features |

3D Structure |

Gene Ontology |

Expression |

Regulation |

Basic Information? help Back to Top

TF ID

Pp3c4_6930V3.4.p

Organism

Physcomitrella patens

Taxonomic ID

3218

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Bryophytina; Bryopsida; Funariidae; Funariales; Funariaceae; Physcomitrella

Family

NF-YC

Protein Properties

Length: 298aa MW: 32096.3 Da PI: 4.6597

Description

NF-YC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pp3c4_6930V3.4.p	genome	COSMOSS	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NF-YC	51.8	1.8e-16	20	94	24	98
NF-YC 24 arikkilkadedvkmisaeaPvllskacelfileltlrswlhaeenkrrtlkksdiaaavtrtdifdflvdivpr 98 arikki++ade+v +i+ +Pvl+ska e+f+ +l +++ + +t+ ++++v+ +fdfl +iv + Pp3c4_6930V3.4.p 20 ARIKKIMQADEEVGKIAVATPVLISKALEMFLQNLCDKTYEITLRRGAKTMSSIHLKQCVQTNSVFDFLQEIVSK 94 8**********************************************************************9976 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF00808	2.3E-15	19	79	IPR003958	Transcription factor CBF/NF-Y/archaeal histone domain
Gene3D	G3DSA:1.10.20.10	4.0E-23	20	93	IPR009072	Histone-fold
SuperFamily	SSF47113	1.12E-18	26	96	IPR009072	Histone-fold

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046982	Molecular Function	protein heterodimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 298 aa Download sequence Send to blast
MPSNQCQRAT KSIYLCSSQA RIKKIMQADE EVGKIAVATP VLISKALEMF LQNLCDKTYE 60 ITLRRGAKTM SSIHLKQCVQ TNSVFDFLQE IVSKVPDIGA ETTGEERISG RRKHSDGDDS 120 DEEVLKRPKS EAQSTSGRGR GRGRGRGGGR GRGSNGGASA RFDGVEKAVD SDDAEMDACS 180 PSSDHEGVIL DSIVHFPKPK VEEAVNRDAT PTSSGPASRS SKLHGFDLNI DLDENGEIAP 240 AIDELVAKEE EEQECDGPGN EATKELDVHS DNVLGGTLHM QGSELHSSVH PDEDDYD*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1jfi_A	4e-18	20	80	15	75	Transcription Regulator NC2 alpha chain

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	141	150	RGRGRGGGRG

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Ppa.16582	0.0	protonema

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_024373765.1	0.0	uncharacterized protein LOC112281461 isoform X1
Refseq	XP_024373766.1	0.0	uncharacterized protein LOC112281461 isoform X1
Refseq	XP_024373768.1	0.0	uncharacterized protein LOC112281461 isoform X1
Refseq	XP_024373769.1	0.0	uncharacterized protein LOC112281461 isoform X1
Refseq	XP_024373770.1	0.0	uncharacterized protein LOC112281461 isoform X1
Refseq	XP_024373771.1	0.0	uncharacterized protein LOC112281461 isoform X1
Refseq	XP_024373772.1	0.0	uncharacterized protein LOC112281461 isoform X1
Refseq	XP_024373773.1	0.0	uncharacterized protein LOC112281461 isoform X1
Refseq	XP_024373774.1	0.0	uncharacterized protein LOC112281461 isoform X1
TrEMBL	A0A2K1KMI3	0.0	A0A2K1KMI3_PHYPA; Uncharacterized protein
STRING	PP1S143_36V6.1	0.0	(Physcomitrella patens)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G12480.1	2e-41	nuclear factor Y, subunit C11

Link Out ? help Back to Top
Phytozome	Pp3c4_6930V3.4.p