PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Bryophytina; Bryopsida; Funariidae; Funariales; Funariaceae; Physcomitrella

Family

G2-like

Protein Properties

Length: 631aa MW: 67403.8 Da PI: 7.1043

Description

G2-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pp3c4_6870V3.13.p	genome	COSMOSS	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	G2-like	96.7	1.8e-30	346	400	1	55
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 k+rlrWtp LHe+Fv av++LGG+++AtPk++l+lm+ +++t++hvkSHLQkYRl Pp3c4_6870V3.13.p 346 KARLRWTPALHEKFVAAVAKLGGPDRATPKSVLRLMGCNDITIYHVKSHLQKYRL 400 68****************************************************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51294	10.019	343	404	IPR017930	Myb domain
Gene3D	G3DSA:1.10.10.60	2.2E-28	345	400	IPR009057	Homeodomain-like
SuperFamily	SSF46689	1.56E-15	345	401	IPR009057	Homeodomain-like
TIGRFAMs	TIGR01557	7.3E-23	346	400	IPR006447	Myb domain, plants
Pfam	PF00249	3.5E-8	348	399	IPR001005	SANT/Myb domain
Pfam	PF14379	1.2E-17	430	473	IPR025756	MYB-CC type transcription factor, LHEQLE-containing domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Plant Ontology ? help Back to Top
PO Term	PO Category	PO Description
PO:0000006	anatomy	plant protoplast
PO:0025017	anatomy	plant spore
PO:0030003	anatomy	protonema
PO:0030018	anatomy	gametophore

Sequence ? help Back to Top
Protein Sequence Length: 631 aa Download sequence Send to blast
MCVVASMAPI SSASASHVPA SQSCVAGASE ECVAPLARFV SRQEDGTSLS LNRAQSISEV 60 FGGSQVISPK ASSGQSFFVA PQGFHEDYDL QYVVNVAMAS HEHGSRQQVP ILADSASELK 120 SPEWSHRNEH NNSQFREPNC APPWQGAPSA IETSNVLAPG SPPSLALTHS QGETLSLPLQ 180 AETNPLWNCP YTQFAKPASE SALRKPSPMM PVAVSDFVSS QEATAKVPAA TTNTRLDSFQ 240 VLLAEASSSQ QPDGSNLSQP VKSPILKSEW ETSGWPHLIH RREMANPPDM LQEPSIAPQT 300 VASSPLLSTQ HPQAEQSQRS TVATSGGSPG PSIEATPMFS AAEVAKARLR WTPALHEKFV 360 AAVAKLGGPD RATPKSVLRL MGCNDITIYH VKSHLQKYRL IPETSTAESK CERKRHNHCQ 420 GGFDVTSTTK MSQALQMQME VQKRLHEQLE TQRQLQLRIE EQGANLQRMI IEQVIAGHAL 480 GIPSDQITNG ELLSNAVSQA LHPSDSSNLF PGITPSKLSQ QPTSWTHTAS TSTGPPPKRT 540 RVEVPALVLI PKIAPKVKYT MPAETSCSHG SAPFANIDPL SQMGNTAIQA AAAPRGDADA 600 MPASRHVNRP QGCVPMQHDG AAAAPMQTSA *

Sequence ? help Back to Top

Protein Sequence Length: 631 aa Download sequence Send to blast

MCVVASMAPI SSASASHVPA SQSCVAGASE ECVAPLARFV SRQEDGTSLS LNRAQSISEV  60
FGGSQVISPK ASSGQSFFVA PQGFHEDYDL QYVVNVAMAS HEHGSRQQVP ILADSASELK  120
SPEWSHRNEH NNSQFREPNC APPWQGAPSA IETSNVLAPG SPPSLALTHS QGETLSLPLQ  180
AETNPLWNCP YTQFAKPASE SALRKPSPMM PVAVSDFVSS QEATAKVPAA TTNTRLDSFQ  240
VLLAEASSSQ QPDGSNLSQP VKSPILKSEW ETSGWPHLIH RREMANPPDM LQEPSIAPQT  300
VASSPLLSTQ HPQAEQSQRS TVATSGGSPG PSIEATPMFS AAEVAKARLR WTPALHEKFV  360
AAVAKLGGPD RATPKSVLRL MGCNDITIYH VKSHLQKYRL IPETSTAESK CERKRHNHCQ  420
GGFDVTSTTK MSQALQMQME VQKRLHEQLE TQRQLQLRIE EQGANLQRMI IEQVIAGHAL  480
GIPSDQITNG ELLSNAVSQA LHPSDSSNLF PGITPSKLSQ QPTSWTHTAS TSTGPPPKRT  540
RVEVPALVLI PKIAPKVKYT MPAETSCSHG SAPFANIDPL SQMGNTAIQA AAAPRGDADA  600
MPASRHVNRP QGCVPMQHDG AAAAPMQTSA *

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
6j4k_A	4e-19	345	399	1	55	Protein PHOSPHATE STARVATION RESPONSE 1
6j4k_B	4e-19	345	399	1	55	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_A	4e-19	345	399	1	55	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_C	4e-19	345	399	1	55	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_D	4e-19	345	399	1	55	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_F	4e-19	345	399	1	55	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_H	4e-19	345	399	1	55	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_J	4e-19	345	399	1	55	Protein PHOSPHATE STARVATION RESPONSE 1
Search in ModeBase

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_024373846.1	0.0	uncharacterized protein LOC112281493 isoform X1
TrEMBL	A9SZS2	0.0	A9SZS2_PHYPA; Predicted protein
STRING	PP1S143_30V6.1	0.0	(Physcomitrella patens)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Representative plant	OGRP78	17	262

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G01060.1	1e-35	G2-like family protein

Link Out ? help Back to Top
Phytozome	Pp3c4_6870V3.13.p
Entrez Gene	5935124

Publications ? help Back to Top
Rensing SA, et al. The Physcomitrella genome reveals evolutionary insights into the conquest of land by plants. Science, 2008. 319(5859): p. 64-9 [PMID:18079367]