PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Pp3c4_5270V3.2.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Bryophytina; Bryopsida; Funariidae; Funariales; Funariaceae; Physcomitrella
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Family | CAMTA | ||||||||
Protein Properties | Length: 1187aa MW: 131768 Da PI: 6.6174 | ||||||||
Description | CAMTA family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | CG-1 | 173.6 | 2.8e-54 | 24 | 140 | 4 | 117 |
CG-1 4 e.kkrwlkneeiaaiLenfekheltl..elktrpksgsliLynrkkvryfrkDGyswkkkkdgktvrEdhekLKvggvevlycyYahseenpt 93 e ++rwl++ e+++iL+n++++ ++l ++ rp sgs++L++rk +ryfrkDG++w+kkkdgktvrE+he+LK+g+v++l+cyYah+e+np Pp3c4_5270V3.2.p 24 EaQTRWLRPLEVCEILQNYANYGFKLnpVPPVRPISGSMFLFDRKTLRYFRKDGHNWRKKKDGKTVREAHERLKIGSVDMLHCYYAHGEDNPC 116 4499*****************9998866899************************************************************** PP CG-1 94 fqrrcywlLeeelekivlvhylev 117 fqrrcyw+L +le+ivlvhy+ev Pp3c4_5270V3.2.p 117 FQRRCYWMLTPTLEHIVLVHYREV 140 **********************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51437 | 81.451 | 18 | 146 | IPR005559 | CG-1 DNA-binding domain |
SMART | SM01076 | 9.9E-72 | 21 | 141 | IPR005559 | CG-1 DNA-binding domain |
Pfam | PF03859 | 7.9E-51 | 24 | 139 | IPR005559 | CG-1 DNA-binding domain |
Pfam | PF01833 | 1.9E-6 | 584 | 668 | IPR002909 | IPT domain |
Gene3D | G3DSA:2.60.40.10 | 1.7E-6 | 584 | 670 | IPR013783 | Immunoglobulin-like fold |
SuperFamily | SSF81296 | 9.33E-18 | 584 | 671 | IPR014756 | Immunoglobulin E-set |
SuperFamily | SSF48403 | 3.26E-17 | 772 | 878 | IPR020683 | Ankyrin repeat-containing domain |
PROSITE profile | PS50297 | 18.935 | 772 | 877 | IPR020683 | Ankyrin repeat-containing domain |
CDD | cd00204 | 6.36E-15 | 772 | 871 | No hit | No description |
Gene3D | G3DSA:1.25.40.20 | 2.5E-17 | 774 | 879 | IPR020683 | Ankyrin repeat-containing domain |
PROSITE profile | PS50088 | 11.167 | 816 | 848 | IPR002110 | Ankyrin repeat |
SMART | SM00248 | 9.9E-5 | 816 | 845 | IPR002110 | Ankyrin repeat |
Pfam | PF00023 | 7.0E-6 | 817 | 847 | IPR002110 | Ankyrin repeat |
SMART | SM00015 | 96 | 938 | 960 | IPR000048 | IQ motif, EF-hand binding site |
PROSITE profile | PS50096 | 7.108 | 939 | 967 | IPR000048 | IQ motif, EF-hand binding site |
SMART | SM00015 | 24 | 982 | 1004 | IPR000048 | IQ motif, EF-hand binding site |
PROSITE profile | PS50096 | 6.888 | 983 | 1012 | IPR000048 | IQ motif, EF-hand binding site |
SuperFamily | SSF52540 | 3.54E-5 | 984 | 1052 | IPR027417 | P-loop containing nucleoside triphosphate hydrolase |
PROSITE profile | PS50096 | 7.803 | 1002 | 1031 | IPR000048 | IQ motif, EF-hand binding site |
SMART | SM00015 | 0.11 | 1024 | 1046 | IPR000048 | IQ motif, EF-hand binding site |
PROSITE profile | PS50096 | 9.359 | 1026 | 1049 | IPR000048 | IQ motif, EF-hand binding site |
Pfam | PF00612 | 0.0023 | 1027 | 1046 | IPR000048 | IQ motif, EF-hand binding site |
SMART | SM00015 | 46 | 1099 | 1121 | IPR000048 | IQ motif, EF-hand binding site |
PROSITE profile | PS50096 | 7.474 | 1100 | 1129 | IPR000048 | IQ motif, EF-hand binding site |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0045944 | Biological Process | positive regulation of transcription from RNA polymerase II promoter | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0001077 | Molecular Function | transcriptional activator activity, RNA polymerase II core promoter proximal region sequence-specific binding | ||||
GO:0005515 | Molecular Function | protein binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 1187 aa Download sequence Send to blast |
MATTSRLHSG SQPPEIDIRQ IISEAQTRWL RPLEVCEILQ NYANYGFKLN PVPPVRPISG 60 SMFLFDRKTL RYFRKDGHNW RKKKDGKTVR EAHERLKIGS VDMLHCYYAH GEDNPCFQRR 120 CYWMLTPTLE HIVLVHYREV TEGGRFSMSD SQHSVPAVHA ASPPEVTHPV TSPDSLQEDG 180 DLFEPEDVED FKGGLQSTLL DQISPGAQGD TDLLRTSHLN VWPGSELRAE YPPNWYGSSS 240 GGGGDSTLAR LSGLLDSPTE LTPKPGEYPP QLSNLQQFES NELSSRNAQM YVQQELFSSN 300 NHYSGGNSVP ANYSESLGKP SNMYGSEDFG SVQRQENIAA AMVSAGWGQE PESVPSSNAG 360 FSQGAPSVSQ SGAALDASQR TGMSQPPPPV YVKQESMSSW AATLTQVTTP GTHQKLMESL 420 MSSNRMDVSD SLGVQDIRFQ QTPPPKDILE AFDPRGLSRE PQAQVEASLN NVAEGKAGKE 480 AFSLYQKRVL STRSDSLPIE LILDSIASQE KASNNEDLRK QESFGRCFSY LSDFSNLLSP 540 STFPLGWSST PTVGDQRAGI DFFNVSRQED TGTGTSITSD LRFTITDFSP EWAYASEGVK 600 VLVTGVFLGS YTNARNFKWC CMFGDIEVPA EVIGTGVLRC KAPSLPAGKV SLYVTCGDRQ 660 AHSEIRCFEY RSGVGRIFPD TKAELQITDE RLLKVRLSRL LLSDSDSHAG EIIDFSGNLD 720 SISLLHGDDD WLELENLAKT SDLSQDSSFL ERLLQTLLKV RMQKWLFCKV QEEGKGVSVL 780 DAHGLGVVHM AAALGYDWVI TPMVTAGVPI NFRDAQGWTA LHWAAFFGKE QVVIALLGHG 840 ADPGAVTDPT PKCPAGQTPA DLASMKGHAG IGGFLAEWSL TRRLSHMTLS ENLDDLAMSN 900 VAAEAAVAKL SRRESVKLSI SGADDPVSVH ESLQAVRNAA RAAALIQAAF RQYSFRKREE 960 DDLASIRLDE YGMTESQMQA LLTARAAQRI QRAYRGHQEK KQQLAASRIQ QKFRSWKVRR 1020 DYLKFRQRVV RIQAQVRGNL VRKRFKKLLW SVGVLEKLVL RWKRKRLGLR GFKSGDYDVD 1080 GKEDDEEFLK EGRKQAIVAL EKSVTTVQTM VRSNEARAQY RRLREGSLRS ELLGQFLSVS 1140 PRGSFTSANT QYEYSHLQQT YVEQNGDSQM QQIYLETSDQ LMNFGA* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2cxk_A | 3e-13 | 585 | 673 | 9 | 91 | calmodulin binding transcription activator 1 |
2cxk_B | 3e-13 | 585 | 673 | 9 | 91 | calmodulin binding transcription activator 1 |
2cxk_C | 3e-13 | 585 | 673 | 9 | 91 | calmodulin binding transcription activator 1 |
2cxk_D | 3e-13 | 585 | 673 | 9 | 91 | calmodulin binding transcription activator 1 |
2cxk_E | 3e-13 | 585 | 673 | 9 | 91 | calmodulin binding transcription activator 1 |
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Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Ppa.17237 | 0.0 | protonema |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_024374672.1 | 0.0 | calmodulin-binding transcription activator 3-like | ||||
Refseq | XP_024374673.1 | 0.0 | calmodulin-binding transcription activator 3-like | ||||
Refseq | XP_024374674.1 | 0.0 | calmodulin-binding transcription activator 3-like | ||||
TrEMBL | A0A2K1KMA2 | 0.0 | A0A2K1KMA2_PHYPA; Uncharacterized protein | ||||
STRING | PP1S188_92V6.2 | 0.0 | (Physcomitrella patens) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G22300.2 | 1e-92 | signal responsive 1 |
Link Out ? help Back to Top | |
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Phytozome | Pp3c4_5270V3.2.p |