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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Pp3c4_3920V3.3.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Bryophytina; Bryopsida; Funariidae; Funariales; Funariaceae; Physcomitrella
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Family | bHLH | ||||||||
Protein Properties | Length: 463aa MW: 50595.5 Da PI: 4.6996 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 35.5 | 1.8e-11 | 393 | 438 | 6 | 55 |
HHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 6 nerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 +++Er RR +i +++ +L++l+P+ ++ + a++L AveY+k+Lq Pp3c4_3920V3.3.p 393 SIAERVRRGKISERMKKLQDLVPSM----DRQTNTADMLDDAVEYVKQLQ 438 689*********************7....699*****************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF47459 | 5.5E-17 | 386 | 456 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
PROSITE profile | PS50888 | 14.761 | 387 | 437 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 3.43E-12 | 391 | 442 | No hit | No description |
Gene3D | G3DSA:4.10.280.10 | 1.5E-17 | 392 | 459 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 1.1E-8 | 393 | 438 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 9.3E-15 | 393 | 443 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 463 aa Download sequence Send to blast |
MGSVDDVLTV MLSDDHDPSS LAAVKTSSNS PFRLPNDMFA LLPYSSSLQG SLSGSGQQLG 60 SSKGTNFPRK GLGRSLAQIP EWPFPKDEKW GLDVLQEPDL TRATNFSPNV IAPQNMKTSR 120 QGGLQRYHSA PSSFLQCLDD FINEPGAYPQ ASSPLPDSDG LLTWADNLAP IMERCSQQMD 180 TEKILPSSEL NDYEEFIATL TDFSTTSRPP ESQKLDSKES LIRQDGLGGF TLPAIQDNME 240 ESSDVTFQMP GFLPQCESMP GPTSEKNGAT NNSKSSTYTP EECTYLVKEP AVSGGLWNCP 300 TNPGKLGGNM PPTGEEVTME PPLDWSRTNS FRTAARVGEA GPKLGGLIRH SSLPAPSRPF 360 SGNVDFDDLF ADPSAVPLKT IRANRGHATH PRSIAERVRR GKISERMKKL QDLVPSMDRQ 420 TNTADMLDDA VEYVKQLQQQ VQELSKTVAE LQQLQERLGR RD* |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Ppa.10347 | 0.0 | protonema| sporophyte |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_024374693.1 | 0.0 | transcription factor bHLH122-like isoform X1 | ||||
Refseq | XP_024374694.1 | 0.0 | transcription factor bHLH122-like isoform X1 | ||||
Refseq | XP_024374695.1 | 0.0 | transcription factor bHLH122-like isoform X1 | ||||
Refseq | XP_024374696.1 | 0.0 | transcription factor bHLH122-like isoform X1 | ||||
Refseq | XP_024374697.1 | 0.0 | transcription factor bHLH122-like isoform X1 | ||||
TrEMBL | A0A2K1KM47 | 0.0 | A0A2K1KM47_PHYPA; Uncharacterized protein | ||||
STRING | PP1S273_40V6.1 | 0.0 | (Physcomitrella patens) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G42280.1 | 1e-30 | bHLH family protein |
Link Out ? help Back to Top | |
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Phytozome | Pp3c4_3920V3.3.p |