PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Bryophytina; Bryopsida; Funariidae; Funariales; Funariaceae; Physcomitrella

Family

M-type_MADS

Protein Properties

Length: 424aa MW: 47293.8 Da PI: 9.4519

Description

M-type_MADS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pp3c4_3820V3.3.p	genome	COSMOSS	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SRF-TF	83	1.8e-26	9	59	1	51
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51 k+ien++nrqvt+skRrng++KK +ELSvLCd++ a+i+fs++gkl y++ Pp3c4_3820V3.3.p 9 KKIENSTNRQVTYSKRRNGLIKKTYELSVLCDIDLALIMFSPSGKLTQYCN 59 68***********************************************85 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50066	28.777	1	61	IPR002100	Transcription factor, MADS-box
SMART	SM00432	8.2E-37	1	60	IPR002100	Transcription factor, MADS-box
SuperFamily	SSF55455	3.01E-30	2	86	IPR002100	Transcription factor, MADS-box
CDD	cd00265	1.54E-37	2	74	No hit	No description
PRINTS	PR00404	2.5E-25	3	23	IPR002100	Transcription factor, MADS-box
PROSITE pattern	PS00350	0	3	57	IPR002100	Transcription factor, MADS-box
Pfam	PF00319	4.5E-24	10	57	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	2.5E-25	23	38	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	2.5E-25	38	59	IPR002100	Transcription factor, MADS-box
PROSITE profile	PS51297	8.483	139	239	IPR002487	Transcription factor, K-box

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 424 aa Download sequence Send to blast
MGRVKLEIKK IENSTNRQVT YSKRRNGLIK KTYELSVLCD IDLALIMFSP SGKLTQYCNS 60 SIEEVIGRFA NLTAHERNKS FEDMLARISN SQMNHDPSKY TRKIENLEYL HKALKKLAGE 120 NLSTKQQPLV GRKSNESETL VLRQELKKAQ EAKELVQQRA RLYLADEQLL QNVTSVQQLA 180 NMETELEQAL ERVRSRKNYV SSAYQTTHAL QRQQHEFLGN SLQMMALRQQ QQQQAGLAGN 240 QLYLQWTMQS DRPGSTQDFF RQQTNPTASL VPATLASQEP GSNGESDPAS AAYFPAGPQA 300 GALESLRRLG MATTSRGLPL HGTSVEQPNG HYNESQQKKA KVEASTDFAT STSAAGEATT 360 EGTSETPFTR KHQQPEQAHG SAGGADWSSH PAKHHLNAFT NGNMFADFTQ HGYQPGWKKL 420 HEM*

Sequence ? help Back to Top

Protein Sequence Length: 424 aa Download sequence Send to blast

MGRVKLEIKK IENSTNRQVT YSKRRNGLIK KTYELSVLCD IDLALIMFSP SGKLTQYCNS  60
SIEEVIGRFA NLTAHERNKS FEDMLARISN SQMNHDPSKY TRKIENLEYL HKALKKLAGE  120
NLSTKQQPLV GRKSNESETL VLRQELKKAQ EAKELVQQRA RLYLADEQLL QNVTSVQQLA  180
NMETELEQAL ERVRSRKNYV SSAYQTTHAL QRQQHEFLGN SLQMMALRQQ QQQQAGLAGN  240
QLYLQWTMQS DRPGSTQDFF RQQTNPTASL VPATLASQEP GSNGESDPAS AAYFPAGPQA  300
GALESLRRLG MATTSRGLPL HGTSVEQPNG HYNESQQKKA KVEASTDFAT STSAAGEATT  360
EGTSETPFTR KHQQPEQAHG SAGGADWSSH PAKHHLNAFT NGNMFADFTQ HGYQPGWKKL  420
HEM*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
6byy_A	6e-17	1	85	1	85	MEF2 CHIMERA
6byy_B	6e-17	1	85	1	85	MEF2 CHIMERA
6byy_C	6e-17	1	85	1	85	MEF2 CHIMERA
6byy_D	6e-17	1	85	1	85	MEF2 CHIMERA
Search in ModeBase

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	GQ334469	1e-129	GQ334469.1 Funaria hygrometrica MIKC* MADS-box transcription factor (MADS10) gene, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_024374484.1	0.0	agamous-like MADS-box protein AGL66 isoform X1
TrEMBL	A0A2K1KM38	0.0	A0A2K1KM38_PHYPA; Uncharacterized protein
STRING	PP1S273_51V6.1	0.0	(Physcomitrella patens)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G77980.1	1e-35	AGAMOUS-like 66

Link Out ? help Back to Top
Phytozome	Pp3c4_3820V3.3.p
Entrez Gene	5943377

Publications ? help Back to Top
Rensing SA, et al. The Physcomitrella genome reveals evolutionary insights into the conquest of land by plants. Science, 2008. 319(5859): p. 64-9 [PMID:18079367]