PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Pp3c4_29470V3.3.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Bryophytina; Bryopsida; Funariidae; Funariales; Funariaceae; Physcomitrella
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Family | NAC | ||||||||
Protein Properties | Length: 91aa MW: 10500.9 Da PI: 5.8924 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 52.1 | 2.1e-16 | 25 | 74 | 2 | 52 |
NAM 2 ppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp.kkvk 52 p+GfrFhPtdeelv +yL kv + + + i+e+d++k+ePwdL+ ++ Pp3c4_29470V3.3.p 25 PVGFRFHPTDEELVGHYLYGKVGRARSDQ--LIQELDLNKFEPWDLHlVLMH 74 89********************9999655..8**************833332 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 1.07E-14 | 19 | 74 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 16.878 | 24 | 90 | IPR003441 | NAC domain |
Pfam | PF02365 | 3.7E-8 | 25 | 66 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 91 aa Download sequence Send to blast |
MSLCEAVEQS SGDFSIRSNS YVRIPVGFRF HPTDEELVGH YLYGKVGRAR SDQLIQELDL 60 NKFEPWDLHL VLMHEHAHLK DIFEFRISPT * |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_024366292.1 | 7e-22 | NAC domain-containing protein 76-like | ||||
Refseq | XP_024366293.1 | 7e-22 | NAC domain-containing protein 76-like | ||||
TrEMBL | X5IAY9 | 2e-20 | X5IAY9_PHYPA; NAC transcription factor PpVNS7 | ||||
STRING | PP1S102_187V6.1 | 4e-45 | (Physcomitrella patens) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G66300.1 | 6e-15 | NAC domain containing protein 105 |
Link Out ? help Back to Top | |
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Phytozome | Pp3c4_29470V3.3.p |