PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Pp3c4_29470V3.2.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Bryophytina; Bryopsida; Funariidae; Funariales; Funariaceae; Physcomitrella
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Family | NAC | ||||||||
Protein Properties | Length: 365aa MW: 40842.8 Da PI: 9.2389 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 44.8 | 4e-14 | 13 | 57 | 53 | 97 |
NAM 53 aeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlskkg 97 +++++wyfFs++dkky+ g+r+nrat+ g+Wkatg++k+++ +++ Pp3c4_29470V3.2.p 13 EDQSDWYFFSHKDKKYPCGNRANRATAGGFWKATGRNKPIHLQRN 57 45679***********************************98644 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51005 | 13.277 | 1 | 118 | IPR003441 | NAC domain |
SuperFamily | SSF101941 | 3.92E-14 | 11 | 82 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 365 aa Download sequence Send to blast |
MSGVCRIGDV TTEDQSDWYF FSHKDKKYPC GNRANRATAG GFWKATGRNK PIHLQRNMID 60 GAPGVVPNYG SGGWVVCRVF RKTKNINANS LDTYCSFKEC QQVEIGMLQP EVVSLRKQEI 120 YLDREVGSIS ITSQLHHPFN FTCKLEINVE DDNTTVHNSF KSNLHHLHRP HEAGKDHSPA 180 PSSSTTLWNL PQGSRINAQN GGTYSSVPGF LGCDSSPTDL HDVGSSVRST ADCLLASYQE 240 TKVDVWNYGR NSHNVQSINV YVLNWTSCLK GHIDQHQPHR CYSGETIWPK MIQGDPAAVR 300 RRKPISRHAT KRSHIQITTS SNAAIFALVN RRYPMRCRTS IVAVETAITQ ERIRGTYHSH 360 HNGV* |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
TrEMBL | A0A2K1KQH8 | 0.0 | A0A2K1KQH8_PHYPA; Uncharacterized protein | ||||
STRING | PP1S102_187V6.1 | 1e-161 | (Physcomitrella patens) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G12260.1 | 4e-22 | NAC 007 |
Link Out ? help Back to Top | |
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Phytozome | Pp3c4_29470V3.2.p |