PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pp3c4_27700V3.2.p
Organism
Physcomitrella patens
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Bryophytina; Bryopsida; Funariidae; Funariales; Funariaceae; Physcomitrella
Family TALE
Protein Properties Length: 489aa    MW: 55984.9 Da    PI: 10.4986
Description TALE family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pp3c4_27700V3.2.pgenomeCOSMOSSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox26.69.9e-094114491854
                        HHHH..SSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS
           Homeobox  18 lFek..nrypsaeereeLAkklgLterqVkvWFqNrRak 54 
                        +Fe   n+yp  ee+  LA+k+gLt ++V++WF N R +
  Pp3c4_27700V3.2.p 411 MFEHflNPYPALEEKCFLARKTGLTRQKVSNWFINARVR 449
                        5775569******************************88 PP
2BELL42.51.7e-14286353168
               BELL   1 erqelqkkkakLlslleeVdkrYkqyveqlqtvissFeavaglgsakpYtslAlkaiSrhFrcLkdai 68 
                        er  l+k k+ L  l+ +V   Yk+y+  l+t+ + F+a  g +sa  Ytsl l+aiSr+Fr +kd +
  Pp3c4_27700V3.2.p 286 ERSRLKKLKTELQALIVKVGSGYKKYRGCLETLRNNFHARGGQDSALTYTSLSLQAISRNFRTMKDPV 353
                        577888999********************************************************976 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM005740.0046229355IPR006563POX domain
PfamPF075267.9E-14233352IPR006563POX domain
PROSITE profilePS5007112.131390453IPR001356Homeobox domain
SMARTSM003895.7E-7390457IPR001356Homeobox domain
SuperFamilySSF466891.37E-16395461IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.603.5E-25396457IPR009057Homeodomain-like
CDDcd000861.11E-8396454No hitNo description
PfamPF059206.2E-16410449IPR008422Homeobox KN domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 489 aa     Download sequence    Send to blast
MVRKVEMQHH MHGNFENPSN YSPSTMVSHR STQRVSRLYE ITFVGTNMAP GGVHHPGPTE  60
FYTGGIQRSS CPAAHTRNVD WRMTQTIEGS LRQIMAECPT LTSAERTPTV RRKHNCPTAD  120
STAKLLTWKR MRSERGVKFQ LALNAIETGT ITTSHLARNI WPGIATAESR ISKRTLELPN  180
YRAISRVDKR RQAVPKPQVA ILVSKDIEES SNAAKRFPVM SNSTGNPLMM PWILRSKFLE  240
AARTMLRDVA APEPITKQRS CDYNRYLAFT VSPEHYSTFE PIGENERSRL KKLKTELQAL  300
IVKVGSGYKK YRGCLETLRN NFHARGGQDS ALTYTSLSLQ AISRNFRTMK DPVDGILRIC  360
SEALREDFSR DHPEKPNECR QRLHRRTVSP RRPAQRGQLP ERAVAILRRW MFEHFLNPYP  420
ALEEKCFLAR KTGLTRQKVS NWFINARVRL WKPMVEELYE DEFAPRSETD ETDGPVEQQS  480
DTRCGQRS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3k2a_A3e-14397457363Homeobox protein Meis2
3k2a_B3e-14397457363Homeobox protein Meis2
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024373238.10.0BEL1-like homeodomain protein 3
TrEMBLA0A2K1KQ580.0A0A2K1KQ58_PHYPA; Uncharacterized protein
STRINGPP1S115_128V6.10.0(Physcomitrella patens)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G19700.37e-43BEL1-like homeodomain 10