PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Pp3c4_2680V3.2.p | ||||||||
Common Name | PHYPADRAFT_173530 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Bryophytina; Bryopsida; Funariidae; Funariales; Funariaceae; Physcomitrella
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Family | ERF | ||||||||
Protein Properties | Length: 195aa MW: 20761.7 Da PI: 10.1137 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 63.3 | 5e-20 | 50 | 99 | 2 | 55 |
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 ykGVr + +g+Wv+eIr+p +kr r++lg+f tae+Aaka++aa+ +l+g Pp3c4_2680V3.2.p 50 VYKGVRKRT-WGKWVSEIREP---NKRSRIWLGSFPTAEMAAKAYDAAAVCLRG 99 7*****887.**********9...336*************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:3.30.730.10 | 6.7E-32 | 50 | 109 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 1.6E-35 | 50 | 113 | IPR001471 | AP2/ERF domain |
Pfam | PF00847 | 1.0E-12 | 50 | 99 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 1.18E-21 | 50 | 109 | IPR016177 | DNA-binding domain |
PROSITE profile | PS51032 | 22.998 | 50 | 107 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 8.6E-10 | 51 | 62 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 4.80E-22 | 51 | 109 | No hit | No description |
PRINTS | PR00367 | 8.6E-10 | 73 | 89 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Plant Ontology ? help Back to Top | ||||||
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PO Term | PO Category | PO Description | ||||
PO:0000006 | anatomy | plant protoplast | ||||
PO:0025017 | anatomy | plant spore | ||||
PO:0030003 | anatomy | protonema | ||||
PO:0030018 | anatomy | gametophore |
Sequence ? help Back to Top |
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Protein Sequence Length: 195 aa Download sequence Send to blast |
MVEKIAVSSL HAKRGGNLLA SLKLNAYSIA KKSSSKLVKP VSLHSGSPKV YKGVRKRTWG 60 KWVSEIREPN KRSRIWLGSF PTAEMAAKAY DAAAVCLRGQ SVKLNFPDSP PQGVQRCTSP 120 RDVQAAAAAA AAACILPASA LPMVNHSVTP SFESTPLNSL HSSSGMSSDD EAEDIDRSHH 180 VTKFCSHVDV VPVE* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5wx9_A | 2e-17 | 51 | 107 | 15 | 72 | Ethylene-responsive transcription factor ERF096 |
Search in ModeBase |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Ppa.6068 | 0.0 | gametophore| protonema| sporophyte |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Putative transcriptional activator. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00656 | PBM | 25215497 | Download |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Slightly induced by cold stress. {ECO:0000269|PubMed:11798174}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_024372564.1 | 1e-141 | ethylene-responsive transcription factor RAP2-1-like | ||||
Swissprot | Q39127 | 1e-28 | TINY_ARATH; Ethylene-responsive transcription factor TINY | ||||
TrEMBL | A0A2K1KLY1 | 1e-139 | A0A2K1KLY1_PHYPA; Uncharacterized protein | ||||
STRING | PP1S480_12V6.2 | 1e-140 | (Physcomitrella patens) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G19210.1 | 2e-22 | ERF family protein |
Link Out ? help Back to Top | |
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Phytozome | Pp3c4_2680V3.2.p |
Entrez Gene | 5948743 |
Publications ? help Back to Top | |||
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