PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pp3c4_23130V3.1.p
Common NamePHYPADRAFT_163773
Organism
Physcomitrella patens
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Bryophytina; Bryopsida; Funariidae; Funariales; Funariaceae; Physcomitrella
Family G2-like
Protein Properties Length: 401aa    MW: 43832.1 Da    PI: 7.21
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pp3c4_23130V3.1.pgenomeCOSMOSSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like101.55.6e-32102156155
            G2-like   1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 
                        k rlrWtpeLHe+Fv av++LGG+++AtPk++ +lm+v+g+t++hvkSHLQkYRl
  Pp3c4_23130V3.1.p 102 KSRLRWTPELHEKFVIAVAHLGGPDRATPKAVQRLMGVQGITIYHVKSHLQKYRL 156
                        68****************************************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129413.08299159IPR017930Myb domain
Gene3DG3DSA:1.10.10.608.4E-30100157IPR009057Homeodomain-like
SuperFamilySSF466895.38E-17101156IPR009057Homeodomain-like
TIGRFAMsTIGR015573.7E-24102157IPR006447Myb domain, plants
PfamPF002491.0E-8104155IPR001005SANT/Myb domain
PfamPF143791.6E-19188233IPR025756MYB-CC type transcription factor, LHEQLE-containing domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Plant Ontology ? help Back to Top
PO Term PO Category PO Description
PO:0000006anatomyplant protoplast
PO:0025017anatomyplant spore
PO:0030003anatomyprotonema
PO:0030018anatomygametophore
Sequence ? help Back to Top
Protein Sequence    Length: 401 aa     Download sequence    Send to blast
MAEPETDLFG AGREWLIWNQ LVPEEDVVAS CWTQLIDVEQ DDGKTLNHTI KYMPLQTPLQ  60
VEPVASRPPT TEQRPKSSSG ATSAESPKPS SSEAGTSGSA SKSRLRWTPE LHEKFVIAVA  120
HLGGPDRATP KAVQRLMGVQ GITIYHVKSH LQKYRLAKYM PEISEEAKAE RRKHDSLLTS  180
LDLGSSYQIA QALQLQMEVQ KKLHEQLEIQ RELQLRIEAQ GQSLQKMLEQ QAKLNHPDLP  240
IGMPSSSTNT VVPTPSSLAL SDSSNTTTRS EDQHAENSAV STTLAHSQTT MDKIDQKQTE  300
AGLTSNTLLT EPAAKRACHE TSSQVNLSGQ ANNIVVPRTK PSYAWESPSP QVQRSSRTMQ  360
ESQQLQTSTA AGSPQKVPQQ AHAASISQHP GRVAQKPVQA *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6j4r_A8e-23102159158Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_B8e-23102159158Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_C8e-23102159158Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_D8e-23102159158Protein PHOSPHATE STARVATION RESPONSE 1
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Ppa.26950.0gametophore| protonema
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024372494.10.0protein PHOSPHATE STARVATION RESPONSE 1-like isoform X2
TrEMBLA0A2K1KPL40.0A0A2K1KPL4_PHYPA; Uncharacterized protein
STRINGPP1S60_59V6.10.0(Physcomitrella patens)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G01060.12e-54G2-like family protein
Publications ? help Back to Top
  1. Rensing SA, et al.
    The Physcomitrella genome reveals evolutionary insights into the conquest of land by plants.
    Science, 2008. 319(5859): p. 64-9
    [PMID:18079367]