PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Pp3c4_20430V3.4.p | ||||||||
Common Name | PpVNS3 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Bryophytina; Bryopsida; Funariidae; Funariales; Funariaceae; Physcomitrella
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Family | NAC | ||||||||
Protein Properties | Length: 359aa MW: 41073.2 Da PI: 7.6987 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 161.9 | 2.4e-50 | 8 | 141 | 1 | 128 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpk..kvka....eekewyfFskrdkkyatgkrknratksgyWkat 86 +p+GfrFhP deelv +yL kkv ++k++l + i++vd+yk+ePwdL++ k+k+ +++++yfFs++dkky+tg+r+nrat +g+Wkat Pp3c4_20430V3.4.p 8 VPVGFRFHPMDEELVGYYLPKKVGDRKIDL-DLIQDVDLYKLEPWDLHEfcKIKNdpneKQTDYYFFSRKDKKYPTGNRSNRATLKGFWKAT 98 599***************************.99**************85464444443355588**************************** PP NAM 87 gkdkevlsk.kgelvglkktLvfykgrapkgektdWvmheyrl 128 g+dk++++k +++l+g++ktLvfy+grap+g ktdW+mhe+rl Pp3c4_20430V3.4.p 99 GRDKPIYTKlGQTLIGMRKTLVFYQGRAPHGIKTDWIMHEFRL 141 ********988889***************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 2.62E-53 | 6 | 162 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 54.327 | 8 | 162 | IPR003441 | NAC domain |
Pfam | PF02365 | 1.5E-24 | 9 | 141 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0010200 | Biological Process | response to chitin | ||||
GO:0048759 | Biological Process | xylem vessel member cell differentiation | ||||
GO:1901348 | Biological Process | positive regulation of secondary cell wall biogenesis | ||||
GO:1990110 | Biological Process | callus formation | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0044212 | Molecular Function | transcription regulatory region DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 359 aa Download sequence Send to blast |
MNQLAARVPV GFRFHPMDEE LVGYYLPKKV GDRKIDLDLI QDVDLYKLEP WDLHEFCKIK 60 NDPNEKQTDY YFFSRKDKKY PTGNRSNRAT LKGFWKATGR DKPIYTKLGQ TLIGMRKTLV 120 FYQGRAPHGI KTDWIMHEFR LDNGPDQPAH DGGWVICRVF KKNKNQKMKI QHEGAISHEE 180 HIGAILPEPV PRSDIPAGGG LLERSHHGVK QEIVNLDDYQ PQSNQREFGL SFNKDDSIHR 240 AIKLMKPDAA NINRFSSNND SNTGLWQIRH PQTSSSSDAT EPNDYETIGG TLYNIDWSAW 300 LQDPVQPGQG PEVLLRCPST TKISSDDVTS PLLQLKRQNS DNFSSLCFWN DTKDFQQM* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
3ulx_A | 5e-42 | 8 | 167 | 15 | 174 | Stress-induced transcription factor NAC1 |
Search in ModeBase |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00266 | DAP | Transfer from AT2G18060 | Download |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AB898083 | 0.0 | AB898083.1 Physcomitrella patens PpVNS3 mRNA for NAC transcription factor PpVNS3, complete cds, ecotype: Gransden 2004. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_024373380.1 | 0.0 | NAC domain-containing protein 76-like | ||||
Refseq | XP_024373381.1 | 0.0 | NAC domain-containing protein 76-like | ||||
Refseq | XP_024373382.1 | 0.0 | NAC domain-containing protein 76-like | ||||
TrEMBL | X5IHC2 | 0.0 | X5IHC2_PHYPA; NAC transcription factor PpVNS3 | ||||
STRING | PP1S201_58V6.1 | 0.0 | (Physcomitrella patens) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G36160.1 | 2e-72 | NAC domain containing protein 76 |
Link Out ? help Back to Top | |
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Phytozome | Pp3c4_20430V3.4.p |
Publications ? help Back to Top | |||
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