PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Pp3c4_18330V3.2.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Bryophytina; Bryopsida; Funariidae; Funariales; Funariaceae; Physcomitrella
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Family | LBD | ||||||||
Protein Properties | Length: 352aa MW: 39020.3 Da PI: 7.1864 | ||||||||
Description | LBD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF260 | 133.7 | 7.3e-42 | 46 | 146 | 1 | 101 |
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlka 92 aCaaCk++rrkCa+dC+lapyfp +qpk+f nvh+lFG+s +l++l+++++++red+++s+vyeA+ r +dPv+G++gvi+ lq+q+++lk Pp3c4_18330V3.2.p 46 ACAACKYQRRKCATDCPLAPYFPPDQPKRFLNVHRLFGVSSILRILRQVDPDKREDTVKSIVYEADTREKDPVHGCLGVIHLLQNQVNKLKD 137 7******************************************************************************************* PP DUF260 93 elallkeel 101 el++++e+l Pp3c4_18330V3.2.p 138 ELVVAREQL 146 ***999885 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50891 | 26.228 | 45 | 146 | IPR004883 | Lateral organ boundaries, LOB |
Pfam | PF03195 | 2.0E-40 | 46 | 143 | IPR004883 | Lateral organ boundaries, LOB |
Sequence ? help Back to Top |
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Protein Sequence Length: 352 aa Download sequence Send to blast |
MQRLKSLEDS SKMTAPPKIS TSGERSIVTG GVGPSSSEPL PGTNTACAAC KYQRRKCATD 60 CPLAPYFPPD QPKRFLNVHR LFGVSSILRI LRQVDPDKRE DTVKSIVYEA DTREKDPVHG 120 CLGVIHLLQN QVNKLKDELV VAREQLFLLE QQHSTSILQQ NYGHSHGGGQ QNYHYHHTQP 180 QYHASTTHQS GNFHDPAPVQ IMTYQDSRAS HAAYHDHARY LAVSDSALHD MLGQQITKME 240 STDPYSSSLS SMRYGSDSGP GSLHVHEHQQ NQQNLGEQQH QGGGSSYTVA GDLERRIFYN 300 PLVDTHAGRH VDPLRSVAAM QGLDTLNPHQ VSDHELRNAG VHLSLTNQYS I* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5ly0_A | 5e-36 | 41 | 147 | 6 | 112 | LOB family transfactor Ramosa2.1 |
5ly0_B | 5e-36 | 41 | 147 | 6 | 112 | LOB family transfactor Ramosa2.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_024374784.1 | 0.0 | LOB domain-containing protein 7-like | ||||
TrEMBL | A0A2K1KP09 | 0.0 | A0A2K1KP09_PHYPA; Uncharacterized protein | ||||
STRING | PP1S13_89V6.1 | 0.0 | (Physcomitrella patens) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G27650.1 | 3e-39 | LOB domain-containing protein 25 |
Link Out ? help Back to Top | |
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Phytozome | Pp3c4_18330V3.2.p |