PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pp3c4_15830V3.4.p
Organism
Physcomitrella patens
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Bryophytina; Bryopsida; Funariidae; Funariales; Funariaceae; Physcomitrella
Family C2H2
Protein Properties Length: 906aa    MW: 96658.2 Da    PI: 7.4255
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pp3c4_15830V3.4.pgenomeCOSMOSSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H214.78.9e-05353377123
                        EEET..TTTEEESSHHHHHHHHHHT CS
            zf-C2H2   1 ykCp..dCgksFsrksnLkrHirtH 23 
                        y+C+   C ksFs +s LkrH   H
  Pp3c4_15830V3.4.p 353 YVCHyeGCVKSFSERSKLKRHFLIH 377
                        9********************8877 PP
2zf-C2H216.42.5e-05385407323
                        ET..TTTEEESSHHHHHHHHHHT CS
            zf-C2H2   3 Cp..dCgksFsrksnLkrHirtH 23 
                        C+   Cgk Fs   nL++H++tH
  Pp3c4_15830V3.4.p 385 CQyeGCGKAFSLDFNLRSHMKTH 407
                        77779*****************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003550.038324348IPR015880Zinc finger, C2H2-like
SuperFamilySSF576672.23E-6324377No hitNo description
Gene3DG3DSA:3.30.160.603.1E-6324349IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS5015710.408324348IPR007087Zinc finger, C2H2
PROSITE patternPS000280326348IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.603.0E-13351375IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM003550.0059353377IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015714.939353382IPR007087Zinc finger, C2H2
PROSITE patternPS000280355377IPR007087Zinc finger, C2H2
SuperFamilySSF576672.14E-14363410No hitNo description
Gene3DG3DSA:3.30.160.609.6E-21376410IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM003550.006383407IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015713.214383412IPR007087Zinc finger, C2H2
PROSITE patternPS000280385407IPR007087Zinc finger, C2H2
SMARTSM003551412437IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280414437IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 906 aa     Download sequence    Send to blast
MDRLGKMLEM VVHGENCLKH IASIYVEEDD GENSSGEEDG VESSAEAGHG SEGRHGLGES  60
VGMEGRDDGV NDENRTEECG GSFDGVHGGG SSEERDDGAV GGGEEMHGGG NIAENGFVQH  120
GDRHNGMTAG GERHSGAAEG ARVEGEKRGC AGGAEDGVEL GEKSLSNSDC DGESGEVQDG  180
PAVRRKRGRP SKSGEWKANM RAAPKVEEPR AVRMNRGVKR RFPGDDSEDD SLPKRVRVRS  240
IAAVCGDYSE PMKGEDVSMD EAVEGGSARK RGRCRKGTTF EGIVEVGETE VSALASCGKR  300
KTMEAVLDSG STKRPRHGRN GAIFACNVKG CKKRFVEAAS LYAHARVHGD RPYVCHYEGC  360
VKSFSERSKL KRHFLIHTGE KPFLCQYEGC GKAFSLDFNL RSHMKTHTGD YHECPYDRCD  420
KRYCQEYKLR AHILKEHKKC SKVTKKSMKV VGTGVSGPNM GDAGGSKKRE VLAGLQTRRS  480
KLQSMKEARL SRIAELEAEK QREGSELGRI ERSLRKLERE QRRVEEGQAV RGVTSVSGSE  540
EVDGENGDEG EEACPSNRNG GDTRSSVEHE SRLEITAMEE GKDVVMFAHK LPTADQGARL  600
VGTMDAKRAE SQQEAGTSLM PTLWVQGARL FQGHVGDHSA LRPHVNSRCP AGAEVAKSGS  660
ACGRRSCGGK EMGVQLRRGN GEGCLQGESS DSGAGRGNGG AGKVGWGLAE GGSGKARVSG  720
TKKSLGAASR GGVGQMDASV VVRGKVVRCS AGEKGKRERE LARVAKQHAG GGVRSSETFV  780
VSMNPILLSS EHGFSPTDAR FMAKEGFPSL AQGLVREQLG GKDGGESTSG RVCPPKEKAY  840
RSMNEVLHSA AGQDGFVGGG GSEEGFARGQ VPAEQSFEDS AAQLFTYHEQ PRAPCCGTWV  900
RGIYD*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ubd_C7e-333254387119PROTEIN (YY1 ZINC FINGER DOMAIN)
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1215220RGVKRR
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024373546.10.0uncharacterized protein LOC112281361 isoform X1
RefseqXP_024373547.10.0uncharacterized protein LOC112281361 isoform X1
RefseqXP_024373548.10.0uncharacterized protein LOC112281361 isoform X1
RefseqXP_024373549.10.0uncharacterized protein LOC112281361 isoform X1
TrEMBLA0A2K1KNM70.0A0A2K1KNM7_PHYPA; Uncharacterized protein
STRINGPP1S13_348V6.10.0(Physcomitrella patens)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G06634.21e-41C2H2 family protein