PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pp3c4_15830V3.2.p
Organism
Physcomitrella patens
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Bryophytina; Bryopsida; Funariidae; Funariales; Funariaceae; Physcomitrella
Family C2H2
Protein Properties Length: 844aa    MW: 90147.2 Da    PI: 8.3016
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pp3c4_15830V3.2.pgenomeCOSMOSSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H214.88.2e-05291315123
                        EEET..TTTEEESSHHHHHHHHHHT CS
            zf-C2H2   1 ykCp..dCgksFsrksnLkrHirtH 23 
                        y+C+   C ksFs +s LkrH   H
  Pp3c4_15830V3.2.p 291 YVCHyeGCVKSFSERSKLKRHFLIH 315
                        9********************8877 PP
2zf-C2H216.62.3e-05323345323
                        ET..TTTEEESSHHHHHHHHHHT CS
            zf-C2H2   3 Cp..dCgksFsrksnLkrHirtH 23 
                        C+   Cgk Fs   nL++H++tH
  Pp3c4_15830V3.2.p 323 CQyeGCGKAFSLDFNLRSHMKTH 345
                        77779*****************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576671.86E-6262315No hitNo description
PROSITE profilePS5015710.408262286IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.602.9E-6262287IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM003550.038262286IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280264286IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.602.8E-13289313IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS5015714.939291320IPR007087Zinc finger, C2H2
SMARTSM003550.0059291315IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280293315IPR007087Zinc finger, C2H2
SuperFamilySSF576673.32E-14301349No hitNo description
Gene3DG3DSA:3.30.160.608.9E-21314348IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS5015713.214321350IPR007087Zinc finger, C2H2
SMARTSM003550.006321345IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280323345IPR007087Zinc finger, C2H2
SMARTSM003551350375IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280352375IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 844 aa     Download sequence    Send to blast
MEGRDDGVND ENRTEECGGS FDGVHGGGSS EERDDGAVGG GEEMHGGGNI AENGFVQHGD  60
RHNGMTAGGE RHSGAAEGAR VEGEKRGCAG GAEDGVELGE KSLSNSDCDG ESGEVQDGPA  120
VRRKRGRPSK SGEWKANMRA APKVEEPRAV RMNRGVKRRF PGDDSEDDSL PKRVRVRSIA  180
AVCGDYSEPM KGEDVSMDEA VEGGSARKRG RCRKGTTFEG IVEVGETEVS ALASCGKRKT  240
MEAVLDSGST KRPRHGRNGA IFACNVKGCK KRFVEAASLY AHARVHGDRP YVCHYEGCVK  300
SFSERSKLKR HFLIHTGEKP FLCQYEGCGK AFSLDFNLRS HMKTHTGDYH ECPYDRCDKR  360
YCQEYKLRAH ILKEHKKCSK VTKKSMKVVG TGVSGPNMGD AGGSKKREVL AGLQTRRSKL  420
QSMKEARLSR IAELEAEKQR EGSELGRIER SLRKLEREQR RVEEGQAVRG VTSVSGSEEV  480
DGENGDEGEE ACPSNRNGGD TRSSVEHESR LEITAMEEGK DVVMFAHKLP TADQGARLVG  540
TMDAKRAESQ QEAGTSLMPT LWVQGARLFQ GHVGDHSALR PHVNSRCPAG AEVAKSGSAC  600
GRRSCGGKEM GVQLRRGNGE GCLQGESSDS GAGRGNGGAG KVGWGLAEGG SGKARVSGTK  660
KSLGAASRGG VGQMDASVVV RGKVVRCSAG EKGKRERELA RVAKQHAGGG VRSSETFVVS  720
MNPILLSSEH GFSPTDARFM AKEGFPSLAQ GLVREQLGGK DGGESTSGRV CPPKEKAYRS  780
MNEVLHSAAG QDGFVGGGGS EEGFARGQVP AEQSFEDSAA QLFTYHEQPR APCCGTWVRG  840
IYD*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ubd_C7e-322633727115PROTEIN (YY1 ZINC FINGER DOMAIN)
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1153158RGVKRR
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024373546.10.0uncharacterized protein LOC112281361 isoform X1
RefseqXP_024373547.10.0uncharacterized protein LOC112281361 isoform X1
RefseqXP_024373548.10.0uncharacterized protein LOC112281361 isoform X1
RefseqXP_024373549.10.0uncharacterized protein LOC112281361 isoform X1
TrEMBLA0A2K1KNM70.0A0A2K1KNM7_PHYPA; Uncharacterized protein
STRINGPP1S13_348V6.10.0(Physcomitrella patens)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G06634.28e-42C2H2 family protein