PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pp3c4_15830V3.1.p
Organism
Physcomitrella patens
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Bryophytina; Bryopsida; Funariidae; Funariales; Funariaceae; Physcomitrella
Family C2H2
Protein Properties Length: 655aa    MW: 70298 Da    PI: 9.2262
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pp3c4_15830V3.1.pgenomeCOSMOSSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H210.90.00157397123
                       EEET..TTTEEESSHHHHHHHHHHT CS
            zf-C2H2  1 ykCp..dCgksFsrksnLkrHirtH 23
                       + C+   C+k+F    +L  H r+H
  Pp3c4_15830V3.1.p 73 FACNvkGCKKRFVEAASLYAHARVH 97
                       789999*****************99 PP
2zf-C2H215.26.1e-05102126123
                        EEET..TTTEEESSHHHHHHHHHHT CS
            zf-C2H2   1 ykCp..dCgksFsrksnLkrHirtH 23 
                        y+C+   C ksFs +s LkrH   H
  Pp3c4_15830V3.1.p 102 YVCHyeGCVKSFSERSKLKRHFLIH 126
                        9********************8877 PP
3zf-C2H2171.7e-05134156323
                        ET..TTTEEESSHHHHHHHHHHT CS
            zf-C2H2   3 Cp..dCgksFsrksnLkrHirtH 23 
                        C+   Cgk Fs   nL++H++tH
  Pp3c4_15830V3.1.p 134 CQyeGCGKAFSLDFNLRSHMKTH 156
                        77779*****************9 PP
4zf-C2H210.90.0015161186123
                        EEET..TTTEEESSHHHHHHHHHH.T CS
            zf-C2H2   1 ykCp..dCgksFsrksnLkrHirt.H 23 
                        ++Cp   C+k++ + + L+ Hi + H
  Pp3c4_15830V3.1.p 161 HECPydRCDKRYCQEYKLRAHILKeH 186
                        68********************9988 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576671.68E-571109No hitNo description
SMARTSM003550.0387397IPR015880Zinc finger, C2H2-like
Gene3DG3DSA:3.30.160.602.1E-67398IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS5015710.4087397IPR007087Zinc finger, C2H2
PROSITE patternPS0002807597IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.602.1E-13100124IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM003550.0059102126IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015714.939102131IPR007087Zinc finger, C2H2
PROSITE patternPS000280104126IPR007087Zinc finger, C2H2
SuperFamilySSF576678.95E-15112159No hitNo description
Gene3DG3DSA:3.30.160.606.4E-21125159IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM003550.006132156IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015713.214132161IPR007087Zinc finger, C2H2
PROSITE patternPS000280134156IPR007087Zinc finger, C2H2
SMARTSM003551161186IPR015880Zinc finger, C2H2-like
Gene3DG3DSA:3.30.160.608.8E-4161183IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE patternPS000280163186IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 655 aa     Download sequence    Send to blast
MKGEDVSMDE AVEGGSARKR GRCRKGTTFE GIVEVGETEV SALASCGKRK TMEAVLDSGS  60
TKRPRHGRNG AIFACNVKGC KKRFVEAASL YAHARVHGDR PYVCHYEGCV KSFSERSKLK  120
RHFLIHTGEK PFLCQYEGCG KAFSLDFNLR SHMKTHTGDY HECPYDRCDK RYCQEYKLRA  180
HILKEHKKCS KVTKKSMKVV GTGVSGPNMG DAGGSKKREV LAGLQTRRSK LQSMKEARLS  240
RIAELEAEKQ REGSELGRIE RSLRKLEREQ RRVEEGQAVR GVTSVSGSEE VDGENGDEGE  300
EACPSNRNGG DTRSSVEHES RLEITAMEEG KDVVMFAHKL PTADQGARLV GTMDAKRAES  360
QQEAGTSLMP TLWVQGARLF QGHVGDHSAL RPHVNSRCPA GAEVAKSGSA CGRRSCGGKE  420
MGVQLRRGNG EGCLQGESSD SGAGRGNGGA GKVGWGLAEG GSGKARVSGT KKSLGAASRG  480
GVGQMDASVV VRGKVVRCSA GEKGKREREL ARVAKQHAGG GVRSSETFVV SMNPILLSSE  540
HGFSPTDARF MAKEGFPSLA QGLVREQLGG KDGGESTSGR VCPPKEKAYR SMNEVLHSAA  600
GQDGFVGGGG SEEGFARGQV PAEQSFEDSA AQLFTYHEQP RAPCCGTWVR GIYD*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ubd_C3e-32741837115PROTEIN (YY1 ZINC FINGER DOMAIN)
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024373546.10.0uncharacterized protein LOC112281361 isoform X1
RefseqXP_024373547.10.0uncharacterized protein LOC112281361 isoform X1
RefseqXP_024373548.10.0uncharacterized protein LOC112281361 isoform X1
RefseqXP_024373549.10.0uncharacterized protein LOC112281361 isoform X1
TrEMBLA0A2K1KNM70.0A0A2K1KNM7_PHYPA; Uncharacterized protein
STRINGPP1S13_348V6.10.0(Physcomitrella patens)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G06634.25e-42C2H2 family protein