PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pp3c4_12970V3.1.p
Organism
Physcomitrella patens
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Bryophytina; Bryopsida; Funariidae; Funariales; Funariaceae; Physcomitrella
Family ARF
Protein Properties Length: 794aa    MW: 85386.2 Da    PI: 7.0829
Description ARF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pp3c4_12970V3.1.pgenomeCOSMOSSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B372.16.9e-23138239199
                        EEEE-..-HHHHTT-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE- CS
                 B3   1 ffkvltpsdvlksgrlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkld 85 
                        f k+lt+sd+++ g +++p+ +ae++       + ++ +  t+  +d +g +W++++iyr++++r++lt+GW+ Fv++++L +gD +vF   
  Pp3c4_12970V3.1.p 138 FAKTLTQSDANNGGGFSVPRYCAETIfppldysSDPPVQ--TVLAKDVHGDVWKFRHIYRGTPRRHLLTTGWSTFVNQKKLVAGDAIVFL-- 225
                        89****************************995444444..8999*********************************************.. PP

                        SSSEE..EEEEE-S CS
                 B3  86 grsefelvvkvfrk 99 
                        ++ ++el+v+v+r+
  Pp3c4_12970V3.1.p 226 RSASGELCVGVRRS 239
                        4479999****985 PP
2Auxin_resp102.36.2e-34320402283
         Auxin_resp   2 ahaastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsserrl.sGtvvgvsdldpvrWpnSkWrsLk 83 
                        a  a  +++FevvY+Prast+eF+vk+  v++al++ + +GmRfkmafetedss++++ +Gt+++v+ +dp+ WpnS+Wr+L+
  Pp3c4_12970V3.1.p 320 AALAVAGKPFEVVYYPRASTAEFCVKAGLVKQALDHTWYAGMRFKMAFETEDSSRISWfMGTIAAVKPADPLLWPNSPWRVLQ 402
                        66778899*************************************************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.101.5E-36129249IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019366.28E-30134256IPR015300DNA-binding pseudobarrel domain
CDDcd100179.36E-21137238No hitNo description
SMARTSM010191.6E-20138240IPR003340B3 DNA binding domain
PROSITE profilePS5086312.59138240IPR003340B3 DNA binding domain
PfamPF023628.2E-21138239IPR003340B3 DNA binding domain
PfamPF065077.3E-30319402IPR010525Auxin response factor
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009725Biological Processresponse to hormone
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 794 aa     Download sequence    Send to blast
MLEPGLRLSM GIKTEKLDDS GGRERSMASG VGESVDRLDA QLWHACAGGM VQLPQVGAKV  60
IYFPQGHGEQ AATTPDFSAS MGPSGTIPCR VVSVNFLADT ETDEVFARMR LQPEGLHGLN  120
DMTEEAPSSP PPEKPASFAK TLTQSDANNG GGFSVPRYCA ETIFPPLDYS SDPPVQTVLA  180
KDVHGDVWKF RHIYRGTPRR HLLTTGWSTF VNQKKLVAGD AIVFLRSASG ELCVGVRRSM  240
RGASGGDSST WHSSANATRA SRWEVKGTES FSDFFAAVGD NGHGGSSNGV SRSGSQGAST  300
TSSFARNRAR VTAKSVLDAA ALAVAGKPFE VVYYPRASTA EFCVKAGLVK QALDHTWYAG  360
MRFKMAFETE DSSRISWFMG TIAAVKPADP LLWPNSPWRV LQVTWDEPDL LQGVSRVSPW  420
QVELVATLPM QLPPFSYPKK KLRAVQPQEL QLQAPGLLNL PLAGSSSFAG QLPTPWGGPA  480
LLENASAGMQ GARHDRFNGP PSMDFRYSNY KRAREHPSEN QYAEQGQTSP AGSARVVLSD  540
PLCGDSHHQF SFLSSGQAHN GGQQQQQQQQ SSQMSGSGLT MGLMPGGSPT RDDGGSNSKS  600
KLKSSPAPTT FLLFGQSIDP SSNSKAAQEQ CVASASSSVE GSSLFQEGLR VSPTSYSSSD  660
NTLEHKDRMR RFNADLNGAS GGTGDGAMSR YRQNEGGPWP ELSIGTEVGS LKWFKEQRLE  720
KEKGSNEALQ HCKVFREGDE VGRTLDLANF KSYEEVYDRL AGMFSVPAAS FKNRVVYQDG  780
EGCTLPVGAE PYG*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4ldy_A7e-753642317353Auxin response factor 1
4ldy_B7e-753642317353Auxin response factor 1
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Ppa.27240.0protonema
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024372942.10.0auxin response factor 10-like isoform X2
RefseqXP_024372943.10.0auxin response factor 10-like isoform X2
TrEMBLA0A2K1KN890.0A0A2K1KN89_PHYPA; Auxin response factor
STRINGPP1S339_47V6.10.0(Physcomitrella patens)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G30080.11e-156auxin response factor 16