PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Pp3c4_11490V3.2.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Bryophytina; Bryopsida; Funariidae; Funariales; Funariaceae; Physcomitrella
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Family | NAC | ||||||||
Protein Properties | Length: 426aa MW: 47389.8 Da PI: 4.9955 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 183.8 | 4e-57 | 22 | 150 | 1 | 129 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkev 92 lppGfrFhPtdeelv++yL+kkv ++++++ ++i+evd++k+ePwdLp k+k +ekewyfFs rd+ky+tg r+nrat++gyWkatgkd++v Pp3c4_11490V3.2.p 22 LPPGFRFHPTDEELVSYYLTKKVLDSRFTV-HAIAEVDLNKCEPWDLPVKAKMGEKEWYFFSLRDRKYPTGMRTNRATDAGYWKATGKDRDV 112 79***************************9.88***************99999*************************************** PP NAM 93 lsk.kgelvglkktLvfykgrapkgektdWvmheyrle 129 +++ +++lvg+kktLvfy+grapkgekt+W+mheyrle Pp3c4_11490V3.2.p 113 FAHgRSHLVGMKKTLVFYRGRAPKGEKTNWIMHEYRLE 150 *9877888****************************85 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 4.18E-64 | 17 | 174 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 61.205 | 22 | 174 | IPR003441 | NAC domain |
Pfam | PF02365 | 1.2E-28 | 23 | 149 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0010072 | Biological Process | primary shoot apical meristem specification | ||||
GO:0010160 | Biological Process | formation of organ boundary | ||||
GO:0010223 | Biological Process | secondary shoot formation | ||||
GO:0048366 | Biological Process | leaf development | ||||
GO:0048504 | Biological Process | regulation of timing of organ formation | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 426 aa Download sequence Send to blast |
MADTSVQGPQ DTDQSQQGEP FLPPGFRFHP TDEELVSYYL TKKVLDSRFT VHAIAEVDLN 60 KCEPWDLPVK AKMGEKEWYF FSLRDRKYPT GMRTNRATDA GYWKATGKDR DVFAHGRSHL 120 VGMKKTLVFY RGRAPKGEKT NWIMHEYRLE GDGGHSLPPR VNKDEWVVCR IFQKSSGAKR 180 SFLFSDSRMR QAIVYQLEDV RSSLPPDMDN NSPNPTVTDG GTCTDCETCA GTEQMSACYN 240 CVHDFDHDKD TNGVMSWINT QPAGMDILQQ VGGLNNLNNL LSKPYPMYDA SYEKGMNLPR 300 QLGFTPQVLM QPANMTTPTG LRVASLRPKT EPSSFSEGED EAQSIPEGYE YGAWQTEKAE 360 ASLYNNDGTG DDSSSPLQSS TGGTELSCLT GSLCSGENGS YKYRLPDITA PVDAGFGHEI 420 LTWAY* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1ut4_A | 3e-56 | 5 | 180 | 2 | 171 | NO APICAL MERISTEM PROTEIN |
1ut4_B | 3e-56 | 5 | 180 | 2 | 171 | NO APICAL MERISTEM PROTEIN |
1ut7_A | 3e-56 | 5 | 180 | 2 | 171 | NO APICAL MERISTEM PROTEIN |
1ut7_B | 3e-56 | 5 | 180 | 2 | 171 | NO APICAL MERISTEM PROTEIN |
3swm_A | 3e-56 | 8 | 180 | 8 | 174 | NAC domain-containing protein 19 |
3swm_B | 3e-56 | 8 | 180 | 8 | 174 | NAC domain-containing protein 19 |
3swm_C | 3e-56 | 8 | 180 | 8 | 174 | NAC domain-containing protein 19 |
3swm_D | 3e-56 | 8 | 180 | 8 | 174 | NAC domain-containing protein 19 |
3swp_A | 3e-56 | 8 | 180 | 8 | 174 | NAC domain-containing protein 19 |
3swp_B | 3e-56 | 8 | 180 | 8 | 174 | NAC domain-containing protein 19 |
3swp_C | 3e-56 | 8 | 180 | 8 | 174 | NAC domain-containing protein 19 |
3swp_D | 3e-56 | 8 | 180 | 8 | 174 | NAC domain-containing protein 19 |
4dul_A | 3e-56 | 5 | 180 | 2 | 171 | NAC domain-containing protein 19 |
4dul_B | 3e-56 | 5 | 180 | 2 | 171 | NAC domain-containing protein 19 |
Search in ModeBase |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00562 | DAP | Transfer from AT5G53950 | Download |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_024372990.1 | 0.0 | NAC domain-containing protein 46-like | ||||
TrEMBL | A0A2K1KN35 | 0.0 | A0A2K1KN35_PHYPA; Uncharacterized protein | ||||
STRING | PP1S227_100V6.1 | 0.0 | (Physcomitrella patens) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G53950.1 | 2e-84 | NAC family protein |
Link Out ? help Back to Top | |
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Phytozome | Pp3c4_11490V3.2.p |