PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pp3c4_10850V3.8.p
Organism
Physcomitrella patens
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Bryophytina; Bryopsida; Funariidae; Funariales; Funariaceae; Physcomitrella
Family B3
Protein Properties Length: 679aa    MW: 75178.5 Da    PI: 7.242
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pp3c4_10850V3.8.pgenomeCOSMOSSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B340.16.3e-13162261198
                        EEEE-..-HHHHTT-EE--HHH.HTT..---..--SEEEEEETTS-EEEEEE..EEETTE..EEE-TTHHHHHHHHT--TT-EEEEEE-SSS CS
                 B3   1 ffkvltpsdvlksgrlvlpkkfaeeh..ggkkeesktltledesgrsWevkliyrkksgr..yvltkGWkeFvkangLkegDfvvFkldgrs 88 
                        f+kv +  d  ++g +vlpk+ +eeh   ++k++++ +tl d +g++W+++++++ ++++  y+++     +v++ +L+ gD+v F++ +  
  Pp3c4_10850V3.8.p 162 FDKVASVTDCRSTGHFVLPKRKVEEHfpPINKPGGIWMTLVDATGKEWSFEFCFWHSKESriYYFK-KFYPYVQSTDLRGGDTVFFSRLE-P 251
                        667777778889999*************99999********************9877777768887.7999****************665.8 PP

                        EE..EEEEE- CS
                 B3  89 efelvvkvfr 98 
                        +++l+++ ++
  Pp3c4_10850V3.8.p 252 QGTLFIGYRK 261
                        8888887765 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.103.7E-19158266IPR015300DNA-binding pseudobarrel domain
CDDcd100171.74E-11160261No hitNo description
SuperFamilySSF1019361.7E-17160263IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS508639.319162263IPR003340B3 DNA binding domain
SMARTSM010191.8E-9162262IPR003340B3 DNA binding domain
PfamPF023622.7E-9164261IPR003340B3 DNA binding domain
PROSITE profilePS5105011.764450500IPR011124Zinc finger, CW-type
PfamPF074966.9E-8455497IPR011124Zinc finger, CW-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 679 aa     Download sequence    Send to blast
MLGGDFPTLS QSQVRHAQFS NHIGSTCGEE SMERRGTFHS FFGKSTPTQE GTTKKSSSAL  60
ASTLSTCQIP GGTSILVGCV LGKAIVKPKQ QIRGSVKRNP GEDRKELLAT SPLNNGPTLN  120
GKGRTGILTF PRSISVNGPR IGNLNSPPPS QKFLGTTMTF LFDKVASVTD CRSTGHFVLP  180
KRKVEEHFPP INKPGGIWMT LVDATGKEWS FEFCFWHSKE SRIYYFKKFY PYVQSTDLRG  240
GDTVFFSRLE PQGTLFIGYR KQKPPPPKQM KALNCGASKD QFKEREHSNG GLTYLANDWS  300
PSLEEVATRQ KKPTKLSADD ANVDYALDRG IIQRKKKRKK EFPPLSLAQR TKVIDHLAVG  360
EALIDKKSTS GRSSTPDTFQ HDDRIAGVLG SKGKRLRVNA DEYAEWKEMQ DLLRPAPGAL  420
PTVLTIEGHD FEEYEAPPVL ITRTYHSPEA HGENQWVKCN DCGSWRRLSA DAFVPAGWIC  480
SDSDLDQGRA YCNAPQELSD HEIHQLLGLG LDAEGRTETQ EDLNEDGDWT TPEHLYSAQA  540
DVCAYKQPTL WSAAMALVDG SLHRGTESYS ELKSCESDTS VPEFTDHGPG MALQSPRLKQ  600
FCDLIEDSSS RRSTFLETRG RKVYENPTDS DEFVDPAGAA KGYEIPRADC YDFLGPVGKV  660
LTPRSEIQPV TQHPLTTM*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6j9a_A5e-2315426116123B3 domain-containing transcription repressor VAL1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1332339QRKKKRKK
2333339RKKKRKK
3333340RKKKRKKE
4335339KKRKK
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024372600.10.0B3 domain-containing protein Os07g0563300-like isoform X2
TrEMBLA0A2K1KMY40.0A0A2K1KMY4_PHYPA; Uncharacterized protein
STRINGPP1S227_33V6.10.0(Physcomitrella patens)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G32010.14e-53HSI2-like 1