PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Pp3c4_10850V3.21.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Bryophytina; Bryopsida; Funariidae; Funariales; Funariaceae; Physcomitrella
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Family | B3 | ||||||||
Protein Properties | Length: 679aa MW: 75178.5 Da PI: 7.242 | ||||||||
Description | B3 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 40.1 | 6.3e-13 | 162 | 261 | 1 | 98 |
EEEE-..-HHHHTT-EE--HHH.HTT..---..--SEEEEEETTS-EEEEEE..EEETTE..EEE-TTHHHHHHHHT--TT-EEEEEE-SS CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh..ggkkeesktltledesgrsWevkliyrkksgr..yvltkGWkeFvkangLkegDfvvFkldgr 87 f+kv + d ++g +vlpk+ +eeh ++k++++ +tl d +g++W+++++++ ++++ y+++ +v++ +L+ gD+v F++ + Pp3c4_10850V3.21.p 162 FDKVASVTDCRSTGHFVLPKRKVEEHfpPINKPGGIWMTLVDATGKEWSFEFCFWHSKESriYYFK-KFYPYVQSTDLRGGDTVFFSRLE- 250 667777778889999*************99999********************9877777768887.7999****************665. PP SEE..EEEEE- CS B3 88 sefelvvkvfr 98 +++l+++ ++ Pp3c4_10850V3.21.p 251 PQGTLFIGYRK 261 88888887765 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.40.330.10 | 3.7E-19 | 158 | 266 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 1.74E-11 | 160 | 261 | No hit | No description |
SuperFamily | SSF101936 | 1.7E-17 | 160 | 263 | IPR015300 | DNA-binding pseudobarrel domain |
PROSITE profile | PS50863 | 9.319 | 162 | 263 | IPR003340 | B3 DNA binding domain |
SMART | SM01019 | 1.8E-9 | 162 | 262 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 2.7E-9 | 164 | 261 | IPR003340 | B3 DNA binding domain |
PROSITE profile | PS51050 | 11.764 | 450 | 500 | IPR011124 | Zinc finger, CW-type |
Pfam | PF07496 | 6.9E-8 | 455 | 497 | IPR011124 | Zinc finger, CW-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0008270 | Molecular Function | zinc ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 679 aa Download sequence Send to blast |
MLGGDFPTLS QSQVRHAQFS NHIGSTCGEE SMERRGTFHS FFGKSTPTQE GTTKKSSSAL 60 ASTLSTCQIP GGTSILVGCV LGKAIVKPKQ QIRGSVKRNP GEDRKELLAT SPLNNGPTLN 120 GKGRTGILTF PRSISVNGPR IGNLNSPPPS QKFLGTTMTF LFDKVASVTD CRSTGHFVLP 180 KRKVEEHFPP INKPGGIWMT LVDATGKEWS FEFCFWHSKE SRIYYFKKFY PYVQSTDLRG 240 GDTVFFSRLE PQGTLFIGYR KQKPPPPKQM KALNCGASKD QFKEREHSNG GLTYLANDWS 300 PSLEEVATRQ KKPTKLSADD ANVDYALDRG IIQRKKKRKK EFPPLSLAQR TKVIDHLAVG 360 EALIDKKSTS GRSSTPDTFQ HDDRIAGVLG SKGKRLRVNA DEYAEWKEMQ DLLRPAPGAL 420 PTVLTIEGHD FEEYEAPPVL ITRTYHSPEA HGENQWVKCN DCGSWRRLSA DAFVPAGWIC 480 SDSDLDQGRA YCNAPQELSD HEIHQLLGLG LDAEGRTETQ EDLNEDGDWT TPEHLYSAQA 540 DVCAYKQPTL WSAAMALVDG SLHRGTESYS ELKSCESDTS VPEFTDHGPG MALQSPRLKQ 600 FCDLIEDSSS RRSTFLETRG RKVYENPTDS DEFVDPAGAA KGYEIPRADC YDFLGPVGKV 660 LTPRSEIQPV TQHPLTTM* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
6j9a_A | 5e-23 | 154 | 261 | 16 | 123 | B3 domain-containing transcription repressor VAL1 |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 332 | 339 | QRKKKRKK |
2 | 333 | 339 | RKKKRKK |
3 | 333 | 340 | RKKKRKKE |
4 | 335 | 339 | KKRKK |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_024372600.1 | 0.0 | B3 domain-containing protein Os07g0563300-like isoform X2 | ||||
TrEMBL | A0A2K1KMY4 | 0.0 | A0A2K1KMY4_PHYPA; Uncharacterized protein | ||||
STRING | PP1S227_33V6.1 | 0.0 | (Physcomitrella patens) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G32010.1 | 4e-53 | HSI2-like 1 |
Link Out ? help Back to Top | |
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Phytozome | Pp3c4_10850V3.21.p |